Spectrometry MS

In contrast to IR and NMR spectroscopy, the principle of mass spectrometry (MS) is based on decomposition and reactions of organic molecules on theii way from the ion source to the detector. Consequently, structure-MS correlation is basically a matter of relating reactions to the signals in a mass spectrum. The chemical structure information contained in mass spectra is difficult to extract because of the complicated relationships between MS data and chemical structures. The aim of spectra evaluation can be either the identification of a compound or the interpretation of spectral data in order to elucidate the chemical structure [78-80],... 

Ultraviolet visible (UV VIS) spectroscopy, which probes the electron distribution especially m molecules that have conjugated n electron systems Mass spectrometry (MS), which gives the molecular weight and formula both of the molecule itself and various structural units within it... 

In many applications in mass spectrometry (MS), the sample to be analyzed is present as a solution in a solvent, such as methanol or acetonitrile, or an aqueous one, as with body fluids. The solution may be an effluent from a liquid chromatography (LC) column. In any case, a solution flows into the front end of a mass spectrometer, but before it can provide a mass spectrum, the bulk of the solvent must be removed without losing the sample (solute). If the solvent is not removed, then its vaporization as it enters the ion source would produce a large increase in pressure and stop the spectrometer from working. At the same time that the solvent is removed, the dissolved sample must be retained so that its mass spectrum can be measured. There are several means of effecting this differentiation between carrier solvent and the solute of interest, and thermospray is just one of them. Plasmaspray is a variant of thermospray in which the basic method of solvent removal is the same, but the number of ions obtained is enhanced (see below). 

Note that in mass spectrometry/mass spectrometry (MS/MS) applications, quadrupole and magnetic sectors can be used together advantageously. It is also worth noting that the quadrapole can be operated without the DC voltages. In this RF-only mode, no mass separation occurs, and these quadrapoles are used as ion transmission guides, described in Chapter 49. 

Tandem mass spectrometry (MS/MS) produces precise structural or sequence information by selective and specific induced fragmentation on samples up to several thousand Daltons. For samples of greater molecular mass than this, an enzyme digest will usually produce several peptides of molecular mass suitable for sequencing by mass spectrometry. The smaller sequences can be used to deduce the sequence of the whole protein. 

Ideally, a mass spectmm contains a molecular ion, corresponding to the molecular mass of the analyte, as well as stmcturaHy significant fragment ions which allow either the direct deterrnination of stmcture or a comparison to Hbraries of spectra of known compounds. Mass spectrometry (ms) is unique in its abiUty to determine direcdy the molecular mass of a sample. Other techniques such as nuclear magnetic resonance (nmr) and infrared spectroscopy give stmctural information from which the molecular mass may be inferred (see Infrared technology and raman spectroscopy Magnetic spin resonance). 

Spectrometric Analysis. Remarkable developments ia mass spectrometry (ms) and nuclear magnetic resonance methods (nmr), eg, secondary ion mass spectrometry (sims), plasma desorption (pd), thermospray (tsp), two or three dimensional nmr, high resolution nmr of soHds, give useful stmcture analysis information (131). Because nmr analysis of or N-labeled amino acids enables determiaation of amino acids without isolation from organic samples, and without destroyiag the sample, amino acid metaboHsm can be dynamically analy2ed (132). Proteia metaboHsm and biosynthesis of many important metaboUtes have been studied by this method. Preparative methods for labeled compounds have been reviewed (133). 

Multidimensional or hyphenated instmments employ two or more analytical instmmental techniques, either sequentially, or in parallel. Hence, one can have multidimensional separations, eg, hplc/gc, identifications, ms/ms, or separations/identifications, such as gc/ms (see CHROMATOGRAPHY Mass spectrometry). The purpose of interfacing two or more analytical instmments is to increase the analytical information while reducing data acquisition time. For example, in tandem-mass spectrometry (ms/ms) (17,18), the first mass spectrometer appHes soft ionization to separate the mixture of choice into molecular ions the second mass spectrometer obtains the mass spectmm of each ion. 

Other spectroscopic methods such as infrared (ir), and nuclear magnetic resonance (nmr), circular dichroism (cd), and mass spectrometry (ms) are invaluable tools for identification and stmcture elucidation. Nmr spectroscopy allows for geometric assignment of the carbon—carbon double bonds, as well as relative stereochemistry of ring substituents. These spectroscopic methods coupled with traditional chemical derivatization techniques provide the framework by which new carotenoids are identified and characterized (16,17). 

Coupling of analytical techniques (detectors) to high-performance liquid chromatographic (HPLC) systems has increased in the last tree decades. Initially, gas chromatography was coupled to mass spectrometry (MS), then to infrai ed (IR) spectroscopy. Following the main interest was to hyphenate analytical techniques to HPLC. 

Although GC/MS is the most widely used analytical method that combines a chromatographic separation with the identification power of mass spectrometry, it is not the only one. Chemists have coupled mass spectrometers to most of the instruments that are used to separate mixtures. Perhaps the ultimate is mass spectrometry/mass spectrometry (MS/MS), in which one mass spectrometer generates and separates the molecular ions of the components of a mixture and a second mass spectrometer examines their fragmentation patterns ... 

Mass spectrometry (MS) is increasingly being combined with reverse phase HPLC or CZE in order to add an additional dimension to the data that a traditional detection system would not provide. A two-dimensional EC-CZE system with mass... 

Multidimensional gas chromatography has also been used in the qualitative analysis of contaminated environmental extracts by using spectral detection techniques Such as infrared (IR) spectroscopy and mass spectrometry (MS) (20). These techniques produce the most reliable identification only when they are dealing with pure substances this means that the chromatographic process should avoid overlapping of the peaks. 

Determining the structure of an organic compound was a difficult and time-consuming process in the 19th and early 20th centuries, but powerful techniques are now available that greatly simplify the problem. In this and the next chapter, we ll look at four such techniques—mass spectrometry (MS), infrared (IR) spectroscopy, ultraviolet spectroscopy (UV), and nuclear magnetic resonance spectroscopy (NMR)—and we U see the kind of information that can be obtained from each. 

At its simplest, mass spectrometry (MS) is a technique for measuring the mass, and therefore the molecular weight (MW), of a molecule. In addition, it s often possible to gain structural information about a molecule by measuring the masses of the fragments produced when molecules are broken apart. 

Proteomics. Figure 2 A strategy for mass spectrometry (MS)-based identification of proteins. 

Tandem mass spectrometry (MS/MS) is a method for obtaining sequence and structural information by measurement of the mass-to-charge ratios of ionized molecules before and after dissociation reactions within a mass spectrometer which consists essentially of two mass spectrometers in tandem. In the first step, precursor ions are selected for further fragmentation by energy impact and interaction with a collision gas. The generated product ions can be analyzed by a second scan step. MS/MS measurements of peptides can be performed using electrospray or matrix-assisted laser desorption/ionization in combination with triple quadruple, ion trap, quadrupole-TOF (time-of-flight), TOF-TOF or ion cyclotron resonance MS. Tandem... 

Brain et al. [137] reported a tandem mass spectrometry (MS-MS) procedure by which a direct measurement from an n-pentane extract of a surfactant is possible. This procedure is excellent from the standpoint of sensitivity and simplicity of sample preparation but is not commonly applied because of the need of an MS-MS instrument. 

Carbocations are intermediates in several kinds of reactions. The more stable ones have been prepared in solution and in some cases even as solid salts, and X-ray crystallographic structures have been obtained in some cases. An isolable dioxa-stabilized pentadienylium ion was isolated and its structure was determined by h, C NMR, mass spectrometry (MS), and IR. A P-fluoro substituted 4-methoxy-phenethyl cation has been observed directly by laser flash photolysis. In solution, the carbocation may be free (this is more likely in polar solvents, in which it is solvated) or it may exist as an ion pair, which means that it is closely associated with a negative ion, called a counterion or gegenion. Ion pairs are more likely in nonpolar solvents. 

Which bond of the ester is broken, the acyl—O or the alkyl—O bond The answer is found by the use of Hj O. If the acyl—O bond breaks, the labeled oxygen will appear in the acid otherwise it will be in the alcohol (see 10-10). Although neither compound is radioactive, the one that contains 0 can be determined by submitting both to mass spectrometry (MS). In a similar way, deuterium can be used as a label for hydrogen. In this case, it is not necessary to use mass spectrometry (MS), since IR and NMR spectra can be used to determine when deuterium has been substituted... 

The combination of chromatography and mass spectrometry (MS) is a subject that has attracted much interest over the last forty years or so. The combination of gas chromatography (GC) with mass spectrometry (GC-MS) was first reported in 1958 and made available commercially in 1967. Since then, it has become increasingly utilized and is probably the most widely used hyphenated or tandem technique, as such combinations are often known. The acceptance of GC-MS as a routine technique has in no small part been due to the fact that interfaces have been available for both packed and capillary columns which allow the vast majority of compounds amenable to separation by gas chromatography to be transferred efficiently to the mass spectrometer. Compounds amenable to analysis by GC need to be both volatile, at the temperatures used to achieve separation, and thermally stable, i.e. the same requirements needed to produce mass spectra from an analyte using either electron (El) or chemical ionization (Cl) (see Chapter 3). In simple terms, therefore, virtually all compounds that pass through a GC column can be ionized and the full analytical capabilities of the mass spectrometer utilized. 

Like the UV detector, the mass spectrometer may be employed as either a general detector, when full-scan mass spectra are acquired, or as a specific detector, when selected-ion monitoring (see Section 3.5.2.1) or tandem mass spectrometry (MS-MS) (see Section 3.4.2) are being used. 

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