Bases identification

Proteomics. Figure 2 A strategy for mass spectrometry (MS)-based identification of proteins. 

Myneni, R. B., Los, S. O. and Tucker, C. J. (1996). Satellite-based identification of linked vegetation index and sea surface temperature anomaly areas from 1982-1990 for Africa, Australia and South America, Geophys. Res. Lett. 23, 729-732. 

Cavasotto C, Orry AJW, Abagyan R A. Strnctnre-based identification of binding sites, native ligands and potential inhibitors for G-protein coupled receptors. Proteins Structure Funct Genet 2003 51 423-33. 

Tandem Mass Spectrometry Electrospray Ionization Fourier Transform -Antibody-Based Identification... 

Molecular Polymer Imprints (University of Texas) -DNA-Based Identification... 

CHEMICAL MARKERS FOR PROTEIN-BASED IDENTIFICATION OR BIODETECTION... 

BACTERIAL PROTEIN BIOMARKER DISCOVERY A FOCUSED APPROACH TO DEVELOPING MOLECULAR-BASED IDENTIFICATION SYSTEMS... 

Hoveyda, A. H. Diversity-Based Identification of Efficient Homochiral Organometallic Catalysts for Enantioselective Synthesis. In Handbook of Combinatorial Chemistry, Nicolaou, K. C., Hanko, R., Hartwig, W., Eds. Wiley-VCH Weinheim, Germany, 2002, Vol. 2, pp 991-1016. 

McDOWELL, J.A., MEAGHER, R.B., Sequence based identification of T-DNA insertion mutations in Arabidopsis Actin mutants act2-l and act4-l, Plant J., 1995, 8, 613-622. 

Brichory, F., et al., "Proteomics-Based Identification of Protein Gene Product 9.5 as a Tumor Antigen that Induces a Humoral Immune Response in Lung Cancer," Cancer Res., 61, 7908-7912 (2001). 

Hirai MY, Sugiyama K, Sawada Y, Tohge T, Obayashi T, Suzuki A, Araki R, Sakurai N, Suzuki H, Aoki K, Goda H, Nishizawa OI, ShibataD, Saito K (2007) Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci USA 104 6478-6483... 

Clasby MC, Chackalamannil S, Czamiecki M, Doller D, Eagen K, Greenlee W, Kao G Lin Y, Tsai H, Xia Y, Ahn HS, Agans-Fantuzzi J, Boykow G Chintala M, Foster C, Smith-Torhan A, Alton K, Bryant M, Hsieh Y, Fan J, Palamanda J. (2007) Metabolism-based identification of a potent thrombin receptor antagonist. J Med Chem 50 129-138. 

Brenke R, Kozakov D, Chuang G-Y et al (2009) Fragment-based identification of drug-gable hot spots of proteins using Fourier... 

Schmidt, H., Taniwaki, M. H., Vogel, R. F., and Niessen, L. (2004a). Utilization of AFLP markers for PCR-based identification of Aspergillus carbonarius and indication for its presence in green coffee samples. J. Appl. Microbiol. 97, 899-909. 

Much of the information on ANS has come not from studies on enzyme extracts but from analysis of DNA sequences and recombinant proteins. Sequences for the ANS were first isolated using transposon generated mutant lines of A. majus and Z. mays They encoded proteins of 40 to 41 kDa that were found to have similarity to 20GDs, during a study on a nonflavonoid enzyme. This sequence-based identification was confirmed by the in vitro assay of the recombinant Perilla frutescens protein, and subsequent assays on recombinant ANS from a range of species that confirmed the requirement for Fe, 20G, and ascorbate. Sequence comparisons show that ANS is more closely related to flavonol synthase (FLS), another 20GD, than to F3H. 

Le Naour F, Misek DE, Krause MC, et al. (2001) Proteomics-based identification of RS/ DJ-1 as a novel circulating tumor antigen in breast cancer. Clin Cancer Res 7, 3328-35. 

Brichory F, Beer D, Le Naour F, Giordano T, Hanash S. (2001) Proteomics-based identification of protein gene product 9.5 as a tumor antigen that induces a humoral immune response in lung cancer. Cancer Res 61, 7908-12. 

All of these requirements point to an automated, wireless-readable sensory-based identification method and network that offers more functionalities and is significantly smarter than the well-known bar code or the unified product code (UPC). 

A Molecular Diversity and Screening-Based Identification of Nonpeptide Ligands... 

For a more in depth discussion, see Hoveyda AH (2002) Diversity-based identification of efficient homochiral organometallic catalysts for enantioselective synthesis. In Nicolaou KC, Hanko R, Hartwig W (eds) Handbook of combinatorial chemistry. Wiley-VCH, New York, Chap 33, p 991... 

Rasmussen, M., Jacobsson, M., and Bjorck, L. (2003). Genome-based identification and analysis of collagen-related structural motifs in bacterial and viral proteins. J. Biol. Chem. 278, 32313-32316. 

HSP27 and Tau protein, respectively. 2D immunoblotting combined with mass spectrometry-based identification methods has been widely applied to the characterization of 2D electrophoretic cross-reactive isoforms of the same protein, e.g., resulting from alternative splicing, co- and/or posttranslational modifications and proteolytic cleavages (15-19). 

Debnath AK, Radigan L, Jiang S (1999) Structure-based identification of small molecule antiviral compounds targeted to the gp41 core structure of the human immunodeficiency virus type 1. J Med Chem 42 3203-3209... 

Acharya P, Dogo-Isonagie C, Lalonde JM et al (2011) Structure-based identification and neutralization mechanism of tyrosine sulfate mimetics that inhibit HIV-1 entry. ACS Chem Biol 6 1069-1077... 

Knowledge based identification of potent antitubercular compounds using structure based virtual screening and structure interaction fingerprints. J Chem Inf Model 49 35 2... 

Han, W., Liu, B., Cao, B., Beutin, L., Kruger, U., Liu, H., Li, Y., Iiu, Y., Feng, L., Wang, L. DNA microarray-based identification of serogroups and virulence gene patterns of Escherichia coli isolates associated with porcine postweaning diarrhea and edema disease. Appl Environ Microbiol 73 (2007) 4082-4088. 

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