From others

As constituents of proteins the amino-acids are important constituents of the food of animals. Certain amino-acids can be made in the body from ammonia and non-nitrogenous sources others can be made from other amino-acids, e.g. tyrosine from phenylalanine and cystine from methionine, but many are essential ingredients of the diet. The list of essential amino-acids depends partly on the species. See also peptides and proteins. 

Girard s reagents Quaternary ammonium salts of the type Me3NCH2CONHNH2 X which form water-soluble compounds with aldehydes and ketones, and are therefore separable from other neutral compounds the aldehyde or ketone may be subsequently regenerated after separation. 

The above coefficients are not absolutely required because they can be estimated from other characteristics. 

Of the general formula, R - S — H, where R represents an aliphatic or cyclic radical, the thiols —also known as mercaptans— are acidic in behavior owing to their S—H functional group they are corrosive and malodorous. Their concentration in crude oils is very low if not zero, but they are created from other sulfur compounds during refining operations and show up in the light cuts, as illustrated in Table 8.6. 

Feedstocks for this very flexible process are usually vacuum distillates, deasphalted oils, residues (hydrotreated or not), as well as by-products from other processes such as extracts, paraffinic slack waxes, distillates from visbreaking and coking, residues from hydrocracking, converted in mixtures with the main feedstock. 

Feedstocks are light vacuum distillates and/or heavy ends from crude distillation or heavy vacuum distillates from other conversion processes visbreaking, coking, hydroconversion of atmospheric and vacuum residues, as well as deasphalted oils. 

The formation bulk density (p ) can be read directly from the density log (see Figure 5.51) and the matrix density (p J and fluid density (p,) found in tables, assuming we have already identified lithology and fluid content from other measurements. The equation can be rearranged for porosity ((])) as follows ... 

If water or gas breakthrough occurs (in an oil well) from a high permeability layer it can dominate production from other intervals. Problems such as this can sometimes be prevented by initially installing a selective completion string, but in single string... 

The results of the review exercise described above confirmed that all shipyards do not have the same attitude towards quality. Whilst the results presented by most of the yards visited were reasonably consistent at 0.5 - 4.5 % repair rate regardless of NDE method, the results from other yards were less satisfactory. The exercise showed that in some yards repair rates were regularly in excess of 10% and that repair rates for radiography tended to be higher than those for ultrasonics. 

The study of clean surfaces encompassed a lot of interest in the early days of surface science. From this, we now have a reasonable idea of the geometric and electronic structure of many clean surfaces, and the tools are readily available for obtaining this infonnation from other systems, as needed. 

Electron-impact energy-loss spectroscopy (EELS) differs from other electron spectroscopies in that it is possible to observe transitions to states below the first ionization edge electronic transitions to excited states of the neutral, vibrational and even rotational transitions can be observed. This is a consequence of the detected electrons not originating in the sample. Conversely, there is a problem when electron impact induces an ionizing transition. For each such event there are two outgoing electrons. To precisely account for the energy deposited in the target, the two electrons must be measured in coincidence. 

Referring to figure BLIP. 7 consider electrons from the event under study as well as from other events all arriving at the two detectors. The electrons from the event under study are correlated in time and result in a peak in the time spectrum centred approximately at the delay time. There is also a background level due to events that bear no fixed time relation to each other. If the average rate of tlie background events in each detector is R and i 2> then the rate that two such events will be recorded within time Ax is given by i g, where... 

When the initial and final internal states of the system are not well-separated in energy from other states then the closed-coupling calculation converges very slowly. An effective strategy is to add a series of correlation temis involving powers of the distance r. between internal particles of projectile and target to the tmncated close-coupling expansion which already includes the important states. 

One can define a phase that is given as an integral over the log of the amplitude modulus and is therefore an observable and is gauge invariant. This phase [which is unique, at least in the cases for which Eq. (9) holds] differs from other phases, those that are, for example, a constant, the dynamic phase or a gauge-transformation induced phase, by its satisfying the analyticity requirements laid out in Section I.C.3. 

A technical difference from other Gaussian wavepacket based methods is that the local hamionic approximation has not been used to evaluate any integrals, but instead Maiti nez et al. use what they term a saddle-point approximation. This uses the localization of the functions to evaluate the integrals by... 

Taking francium as an example, it was assumed that the minute traces of francium ion Fr could be separated from other ions in solution by co-precipitation with insoluble caesium chlorate (VII) (perchlorate) because francium lies next to caesium in Group lA. This assumption proved to be correct and francium was separated by this method. Similarly, separation of astatine as the astatide ion At was achieved by co-precipitation on silver iodide because silver astatide AgAt was also expected to be insoluble. 

These apparent anomalies are readily explained. Elements in Group V. for example, have five electrons in their outer quantum level, but with the one exception of nitrogen, they all have unfilled (I orbitals. Thus, with the exception of nitrogen. Group V elements are able to use all their five outer electrons to form five covalent bonds. Similarly elements in Group VI, with the exception of oxygen, are able to form six covalent bonds for example in SF. The outer quantum level, however, is still incomplete, a situation found for all covalent compounds formed by elements after Period 2. and all have the ability to accept electron pairs from other molecules although the stability of the compounds formed may be low. This... 

There are many compounds in existence which have a considerable positive enthalpy of formation. They are not made by direct union of the constituent elements in their standard states, but by some process in which the necessary energy is provided indirectly. Many known covalent hydrides (Chapter 5) are made by indirect methods (for example from other hydrides) or by supplying energy (in the form of heat or an electric discharge) to the direct reaction to dissociate the hydrogen molecules and also possibly vaporise the other element. Other known endothermic compounds include nitrogen oxide and ethyne (acetylene) all these compounds have considerable kinetic stability. 

Many ionic halides dissolve in water to give hydrated ions. The solubility of a given halide depends on several factors, and generalisations are difficult. Ionic fluorides, however, often differ from other halides in solubility. For example, calcium fluoride is insoluble but the other halides of calcium are highly soluble silver fluoride. AgF, is very soluble but the other silver halides are insoluble. 

Ions with hydroxyl bridges are probably formed from other hydrated metal ions. e.g. (AKHjOif,). (Fe(H20)<,). ... 

Initially, the only means of obtaining elements higher than uranium was by a-particle bombardment of uranium in the cyclotron, and it was by this means that the first, exceedingly minute amounts of neptunium and plutonium were obtained. The separation of these elements from other products and from uranium was difficult methods were devised involving co-precipitation of the minute amounts of their salts on a larger amount of a precipitate with a similar crystal structure (the carrier ). The properties were studied, using quantities of the order of 10 g in volumes of... 

Figure 8 shows a one-dimensional sketch of a small fraction of that energy landscape (bold line) including one conformational substate (minimum) as well as, to the right, one out of the typically huge number of barriers separating this local minimum from other ones. Keeping this picture in mind the conformational dynamics of a protein can be characterized as jumps between these local minima. At the MD time scale below nanoseconds only very low barriers can be overcome, so that the studied protein remains in or close to its initial conformational substate and no predictions of slower conformational transitions can be made. 

The time that the trajectory must spend at / max to ensure that the equilibrium distribution is sampled is at least Tmin, the time required to surmount the largest barrier separating the global energy minimum from other thermodynamically important states. Using Eq. (39) we find... 

Although smaller timesteps would eventually allow the RK-4 method to produce more accurate results, the method must pay a large price in terms of function evaluations. Qualitatively similar results can be expected from other popular nonsymplectic schemes. 

This book is conceived as a textbook for application in teaching and self-learning of chemoinfoimatics. We aim to present a comprehensive overview of the field of che-moinformatics for students, teachers, and scientists from other areas of chemistry, from biology, informatics, and medicine. Those interested in a more in-depth presentation and analysis of the topics in this Textbook are referred to an accompanying set of four volumes. 

Graphs are used in mathematics to describe a variety of problems and situations [.37. The methods of graph theoi y analyze graphs and the problems modeled by them, The transfer of models and abstractions from other sciences (computer science, chemistry, physics, economics, sociology, etc.) to graph theory makes it possible to process them mathematically because of the easily understandable basics of graph theory. 

In chemoinformatics, chirality is taken into account by many structural representation schemes, in order that a specific enantiomer can be imambiguously specified. A challenging task is the automatic detection of chirality in a molecular structure, which was solved for the case of chiral atoms, but not for chirality arising from other stereogenic units. Beyond labeling, quantitative descriptors of molecular chirahty are required for the prediction of chiral properties such as biological activity or enantioselectivity in chemical reactions) from the molecular structure. These descriptors, and how chemoinformatics can be used to automatically detect, specify, and represent molecular chirality, are described in more detail in Chapter 8. 

PDB files were designed for storage of crystal structures and related experimental information on biological macromolecules, primarily proteins, nucleic acids, and their complexes. Over the years the PDB file format was extended to handle results from other experimental (NM.R, cryoelectron microscopy) and theoretical methods... 

Some of the concepts that chemists have introduced for the discussion of chemical reactivity are summarized below. Much of this will be common knowledge to readers that have studied chemistry they can easily skip this section. However, for readers from other scientific disciplines or whose chemical knowledge has become rusty, some fundamental concepts are presented here. 

A very important data mining task is the discovery of characteristic descriptions for subsets of data, which characterize its members and distinguish it from other subsets. Descriptions can, for example, be the output of statistical methods like average or variance. 

An example of the neural network prediction of NMR chemical shifts for a natural product is illustrated in Figure 10.2-7 together with the calculations from other methods. This molecule was chosen as it had been discovered [47]... 

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