Big Chemical Encyclopedia

Chemical substances, components, reactions, process design ...

Articles Figures Tables About

Models proteins

The various folding mechanisms expected in foldable sequences may be classified in tenns of the (Sj,. We have already shown that sequences that fold extremely rapidly have very small values of Gj,. Based on our study of several model proteins as well as analysis of real proteins we classify the folding kinetics of proteins in the following [7]. [Pg.2657]

Dill K A, Bromberg S, Yue K, Fiebig K M, Yee D P, Thomas P D and Chan H S 1995 Principles of protein folding—a perspective from simple exact models Protein Sci. 561-602... [Pg.2665]

Kondo A and FllgashItanI K 1992 Adsorption of model proteins with wide variation In molecular properties on colloidal particles J. Colloid Interfaoe Sc/. 150 344-51... [Pg.2851]

A Sail, L Potterton, F Yuan, H van Vlijmen, M Karplus. Evaluation of comparative protein structure modeling by MODELLER. Proteins 23 318-326, 1995. [Pg.308]

J Novotny, AA Rashm, RE Bruccoleri. Criteria that discriminate between native proteins and mcoiTectly folded models. Proteins 4 19-30, 1988. [Pg.310]

K Karplus, K Sjolander, C Barrett, M Cline, D Haussler, R Hughey, L Holm, C Sander. Predicting protein structure using hidden Markov models. Proteins Suppl 134-139, 1997. [Pg.345]

KA Dill, S Bromberg, K Yue, KM Fiebig, DP Yee, PD Thomas, HS Chan. Principles of protein folding—A perspective from simple exact models. Protein Sci 4 561-602, 1995. [Pg.389]

CJ Camacho, D Thiiaimalai. Kinetics and thermodynamics of folding m model proteins. Proc Natl Acad Sci USA 90 6369-6372, 1993. [Pg.390]

A Kitao, S Hayward, N Go. Energy landscape of a native protein Jumpmg-among-mimma model. Proteins 33 496-517, 1998. [Pg.391]

Certain side-chain conformations are energetically mote favorable than others. Computer programs used to model protein structures contain rotamer libraries of such favored conformations. [Pg.12]

Figure 11.15 Cation-exchange mia O-LC analysis of a mixture of model proteins (a) the original sample consisting of myoglobin (M), cytochrome C (C) and lysozyme (L) (b) and (c) proteins adsorbed on to and then released from the polyaaylic acid coated fibre with exti ac-tion times of 5 and 240 s, respectively. Reprinted from Journal of Microcolumn Separations, 8, J.-L. Liao et al., Solid phase mia O exti action of biopolymers, exemplified with adsorption of basic proteins onto a fiber coated with polyaaylic acid, pp. 1-4, 1996, with permission from Jolm Wiley Sons, New York. Figure 11.15 Cation-exchange mia O-LC analysis of a mixture of model proteins (a) the original sample consisting of myoglobin (M), cytochrome C (C) and lysozyme (L) (b) and (c) proteins adsorbed on to and then released from the polyaaylic acid coated fibre with exti ac-tion times of 5 and 240 s, respectively. Reprinted from Journal of Microcolumn Separations, 8, J.-L. Liao et al., Solid phase mia O exti action of biopolymers, exemplified with adsorption of basic proteins onto a fiber coated with polyaaylic acid, pp. 1-4, 1996, with permission from Jolm Wiley Sons, New York.
Modeling Protein Diagenesis in Ancient Bone Towards a Validation of Stable Isotope Data... [Pg.173]

What does modeling protein diagenesis mean The ultimate goal would be the full imderstanding of biochemical processes, but the probability... [Pg.174]

For the examination of model protein-protein interactions and the assembly of novel three-dimensional structures, block copolypeptides are required that have... [Pg.14]

Buchwald, P., Bodor, N. Octanol-water partition of nonzwitterionic peptides predictive power of a molecular size-based model. Proteins 1998, 30, 86-99. [Pg.403]

Lau, S. Y. M., Taneja, A. K., and Hodges, R. S., Effects of high-performance liquid chromatographic solvents and hydrophobic matrices on the secondary and quaternary structure of a model protein. Reversed-phase and size exclusion high-performance liquid chromatography, /. Chromatogr., 317, 129, 1984. [Pg.197]

Proteins may be covalently attached to the latex particle by a reaction of the chloromethyl group with a-amino groups of lysine residues. We studied this process (17) using bovine serum albumin as a model protein - the reaction is of considerable interest because latex-bound antigens or antibodies may be used for highly sensitive immunoassays. The temperature dependence of the rate of protein attachment to the latex particle was unusually small - this rate increased only by 27% when the temperature was raised from 25°C to 35°C. This suggests that non-covalent protein adsorption on the polymer is rate determining. On the other hand. the rate of chloride release increases in this temperature interval by a factor of 17 and while the protein is bound to the latex particle by only 2 bonds at 25°C, 22 bonds are formed at 35°C. [Pg.324]

Lathrop RH, Casale M, Tobias DJ, Marsh JL, Thompson LM. Modeling protein homopolymeric repeats possible polyglutamine structural motifs for Eluntington s disease. Proc Int Conf Intelligent Syst Molec Biol 1998 6 105-114. [Pg.270]

Schutz CN, Warshel A (2001) What are the dielectric constants of proteins and how to validate electrostatic models Proteins 44 400-417. [Pg.283]

DW Urry, SQ Peng, TM Parker, DC Gowda, RD Harris. Relative significance of electrostatic-induced and hydrophobic-induced pKa shifts in a model protein—The aspartic acid residue. Angew Chem Int Ed 32 1440-1442, 1993. [Pg.548]

Because simple lattice models take no account of local directional preferences, they fail to model these important local restraints on protein structure. Instead, they rely almost entirely on long-range interactions to encode the most stable conformation(s) (Dill et al., 1995). Thus the ability of lattice models to reproduce protein-like behavior must be called into question. And though their simplicity makes them intellectually attractive, their use in teaching and modeling protein-like behavior must be qualified with a caveat that local directional preferences have been ignored. [Pg.43]

Cox, G.A. and Johnston, R.L., Analyzing energy landscapes for folding model proteins, /. Chem. Phys., 124,204714,2006. [Pg.171]

Recently, novel polymethine carbonyl-dyes based on coumarin moiety and their boron difluoride complexes 9a-d and lOa-d [34—36] were evaluated as fluorescent dyes for the detection of native proteins using bovine serum albumin (BSA) as a model protein, and as probes for the nonspecific detection of proteins using a BSA/ sodium dodecyl sulfate (SDS) mixture [37]. Optical properties of these compounds in the absence and presence of BSA, as well as in SDS and BSA/SDS mixture, were measured in Tris-HCl buffer (pH 8.0) (Table 1). [Pg.31]

Extending Semi-Empirical Calculations to Model Protein Structure and Enzyme Reaction Mechanisms... [Pg.35]

Pierik, A.J., Hagen, W.R., Dunham, W.R., and Sands, R.H. 1992a. Multi-frequency EPR and high-resolution Mossbauer spectroscopy of a putative [6Fe-6S] prismane-cluster-containing protein from Desulfovibrio vulgaris (Hildenborough) characterization of a supercluster and superspin model protein. European Journal of Biochemistry 206 705-719. [Pg.237]

Stelea SD, Pancoska P, Benight AS, et al. Thermal unfolding of ribonuclease A in phosphate at neutral pH deviations from the two-state model. Protein Sci. 2001 10 970-978. [Pg.285]

O Hagan DT, Jeffery H, Davis SS (1994) The preparation and characterization ofpoly (lactide-co-glycolide) microparticles III. Microparticle/polymer degradation rates and the in vitro release of a model protein. Int J Pharm 103 37-45... [Pg.57]

Panyam J, Dali MM, Sahoo SK et al (2003) Polymer degradation and in vitro release of a model protein from poly(D, L-lactide-co-glycolide) nano- and microparticles. J Control Release 92 173-187... [Pg.60]


See other pages where Models proteins is mentioned: [Pg.251]    [Pg.352]    [Pg.352]    [Pg.558]    [Pg.577]    [Pg.325]    [Pg.281]    [Pg.300]    [Pg.376]    [Pg.517]    [Pg.11]    [Pg.443]    [Pg.156]    [Pg.343]    [Pg.775]    [Pg.296]    [Pg.297]    [Pg.298]    [Pg.288]    [Pg.277]    [Pg.81]   
See also in sourсe #XX -- [ Pg.394 ]

See also in sourсe #XX -- [ Pg.208 ]




SEARCH



Active-Site and Protein Models

Animal Models protein

Applications in Protein Structure and Function Modeling

Automated protein modelling

Blue proteins model studies

Breakage models, protein

Carbohydrate-Protein Recognition Model

Carbohydrate-protein linkages model compounds

Coarse-grained protein models

Comparative modeling identifying related proteins

Comparative modelling of proteins

Comparative modelling proteins

Computational modeling tertiary protein structure

Constructing protein models

Continuous protein models

Contraction model protein

Convection-diffusion model, protein

Copper coordination complexes, models proteins

Copper proteins model complexes

Copper proteins models

Copper proteins synthetic models

Cysteine-Containing Oligopeptide Model Complexes of Iron-Sulfur Proteins

Designed model proteins

Dinuclear copper proteins model complexes

Discretized lattice models, protein folding

DnaK protein model

Drug delivery model protein

Drug discovery comparative protein modelling

Elastic model proteins

Elastic model proteins GVGVP)

Elastic-contractile model protein

Elastic-contractile model protein machines

Elastic-contractile model proteins elasticity

Elastic-contractile model proteins hydrophobic association

Elastic-contractile model proteins limitations

Elastic-contractile model proteins structure

Elastic-contractile model proteins transition

Elasticity model protein

Electron transfer proteins, modeling

Energies model protein

Energies model proteins conversion

Energy inputs model protein

Evaluating an Explicit Flow Model for the Protein Routing Question

Evaluating protein models

Example Evaluation of Protein Models

Fitness model proteins

Framework protein folding model

Franke protein binding model

Free energy modeling protein folding

Functional groups model protein reduction

GBEMP Model for Proteins

Genetic engineering model protein

Global ADME Models for Intestinal Absorption and Protein Binding

Grained Protein Models

Helical proteins, molecular model

Helix-hairpin model, membrane protein

Heme protein models

Heme proteins model complexes

Hydrophobic collapse protein folding model

Hydrophobic-polar model, protein folding

Inverse temperature transitions model protein

Iron-sulfur proteins model compounds

Iron-sulfur proteins model studies

Irreversible protein aggregation, model

Kallikreins protein models

Knowledge-based prediction protein modeling

Knowledge-based protein modeling

Large Analyte Ions such as Dendrimers and Proteins are Most Probably Produced by the Charged Residue Model (CRM)

Lattice heteropolymers, protein folding models

Lattice models protein folding kinetics

Lattices models for proteins

Light-harvesting pigment protein complex model

Mechanical work model protein

Membrane channel protein, function molecular model

Membrane lipid-protein interaction model

Membrane transport proteins structural models

Membrane-bound proteins molecular modeling

Microscopic model, protein

Mimicking Nature Bio-inspired Models of Copper Proteins

Minimal models tertiary protein structure

Model building, protein crystallography

Model compounds proteins

Model for circadian oscillations in the Drosophila PER protein

Model for protein binding

Model particle size distribution, protein

Model protein machines

Model protein machines motion produced

Model protein machines synthetic

Model protein studies

Model protein studies contraction

Model protein studies energy conversions

Model protein studies interpreted from

Model protein-cell system

Model proteins contraction with

Model proteins families

Model proteins hydrophobicity

Model proteins inputs

Model proteins insoluble

Model proteins inverse temperature

Model proteins mechanical work performed

Model proteins medical applications

Model proteins molecular structure

Model proteins motors

Model proteins order, increased

Model proteins transitions

Model proteins with energy contributed

Model system, protein interactions

Modeling Flavin Coenzyme Function in Peptides and Proteins

Modeling Nicotinamide Coenzyme Function in Protein and Peptide Systems

Modeling Thiamine Catalysis in Protein and Peptide Systems

Modeling of protein structures

Models for Protein Release from Matrices

Models green fluorescent proteins

Models photoactive yellow protein

Molecular Recognition in Biology: Models for Analysis of Protein-Ligand

Molecular modeling MoFe-protein

Molecular modeling protein force fields

Molecular modeling protein structure prediction

Molecular modeling protein-ligand interactions

Molecular modelling molecules proteins quantum mechanics

Monte Carlo sampling protein modeling

Motion model protein machines

Motion synthetic model protein

Muscle contraction model protein

Native protein structures modeling techniques

Natively disordered proteins, models

Nitrogenase MoFe protein models

Nucleation-condensation protein folding model

On Modeling Folding of Proteins

Other Aspects of Protein Modeling

Overall Protein Model Construction Methods

Periodic protein models

Photosynthesis synthetic model protein

Platinum-protein interactions, models

Population balances, modeling, protein

Precipitate behavior, models, protein

Precipitate behavior, models, protein precipitation

Prediction techniques protein modeling

Prion protein amyloid, structural models

Protein Flexibility in Structure-Based Virtual Screening From Models to Algorithms

Protein Modeling Folding Unfolding Dynamics

Protein Residues, Homology Modeling

Protein adsorption equilibrium model development

Protein adsorption kinetics model applicability

Protein adsorption model testing

Protein adsorption molecular models

Protein binding model

Protein docking modeling

Protein dynamics molecular modelling

Protein folding atomistic models

Protein folding conformational unfolding model

Protein folding continuous models

Protein folding diffusion-collision model

Protein folding lattice models

Protein folding mechanisms lattice models

Protein folding simple, exact models

Protein force fields model compounds

Protein homology model

Protein homology model building

Protein homology modeling

Protein homology modeling applications

Protein homology modeling steps

Protein model for

Protein modeling

Protein modeling Chemical Computing Group

Protein modeling Tripos

Protein modeling applications

Protein modelling

Protein models biochemical experiments using

Protein models refining

Protein molecular models

Protein mosaic model, membrane

Protein mosaic model, membrane structures

Protein multiple regression modeling

Protein quartet model

Protein secretion models

Protein sequence model building

Protein side-chain modeling

Protein simple lattice models

Protein structural models, usage

Protein structure homology modeling

Protein structure modeling

Protein structure remote homology modeling

Protein unfolding modelling

Protein-based machines model

Protein-based materials Elastic model proteins

Proteins QSAR models

Proteins barrier model approximation

Proteins comparative model

Proteins computational models

Proteins model-free approach

Proteins molecular modelling

Proteins pharmacokinetic modelling

Proteins pleated-sheet model

Proteins regions, model building

Proteins ribbon model

Proteins space-filling model

Proteins tunneling pathway model

Proteins, protonation equilibria modeling

Protons model protein machines

Pseudo-protein models

Reaction center proteins, modeling

Reaction center proteins, modeling electron transfer from

Reduced protein models

Related proteins as phasing models

Ruthenium electron-transfer protein models

Sampling Kinetic Protein Folding Pathways using All-Atom Models Bolhuis

Secondary protein structure physical model

Simple Heme Protein Models

Simulated annealing protein model

Slab model, protein

Solvent protein model

Step 4 Constructing Protein Models

Step 5 Refinement of Protein Models

Step 6 Evaluating Protein Models

Stress-70 protein family model

Structural model of protein

Structure and Properties of Keratin Protein Model Gel

Structure-based computational models of ligand-protein binding dynamics and molecular docking

Tertiary protein structure computational models

The CME model for protein synthesis in a single cell

Theoretical protein models

Three-dimensional model phases proteins

Three-dimensional model, homologous proteins

Toward a Model of the Receptor-G Protein Complex

Transitions model protein-water systems

Transitions model proteins, water

Two Models of the Protein-Adsorption Processes

Working Model for an ATP-independent Heat-shock Protein

Zinc proteins models

© 2024 chempedia.info