Assembled structures

Ferre-D Amare, A.R., Burley, S.K. Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies. Structure 2 357-359,... 

The tube bundle is fabricated as a rigid structure to be handled as an individual assembly. Structural steel side members and tube supports are used for this purpose. Such supports are used beneath the bottom of the tubes to prevent the... 

FIG. 1 Self-assembled structures in amphiphilic systems micellar structures (a) and (b) exist in aqueous solution as well as in ternary oil/water/amphiphile mixtures. In the latter case, they are swollen by the oil on the hydrophobic (tail) side. Monolayers (c) separate water from oil domains in ternary systems. Lipids in water tend to form bilayers (d) rather than micelles, since their hydrophobic block (two chains) is so compact and bulky, compared to the head group, that they cannot easily pack into a sphere [4]. At small concentrations, bilayers often close up to form vesicles (e). Some surfactants also form cyhndrical (wormlike) micelles (not shown). 

Woolfson and Mahmoud have classified the routes to preparation of decorated self-assembling peptide materials [53] as (1) co-assembly, where the functional part is already attached to a self-assembling component prior to assembly, and (2) postassembly, where a non-functionahsed self-assembled structure is modified by covalent or non-covalent means. This discussion adheres to this classification. A third route, beyond the scope of this review, is the use of structured peptides as templates for inorganic materials. Section 4.1 discusses functionalised self-assemblies formed from co-assembly-type approaches, while post-assembly modifications of self-assembled structures are considered in Sect. 4.2. 

Due to its unique chemical composition and structure, DNA can interact with a plethora of chemical structures via numerous types of bonds. This property ultimately defines the ability of DNA fragments to serve as the building blocks in the complex three-dimensional self-assembled structures. Following we Ust four major types of polymer/DNA interactions that can lead to formation of supramolecular structures ... 

Figure 6.4. Schematic phase diagram for a three-component (oil, water, surfactant) system showing some of the self-assembled structures which form in the various regions.

It should be noted that in this definition a system that ends up having a self-assembled structure may also start far from equilibrium and may be dynamic until the final structure has been reached. 

Micelles the mostly spherical nanoscale aggregates formed by amphiphilic compounds above their critical micelle concentration in aqueous solution have a narrow size distribution and are dynamic, because there is a fast exchange of amphiphiles in solution and those incorporated in micelles. However, micelles are defined as self-assembled structures, since the structure is in thermodynamical equilibrium. 

The lipid molecule is the main constituent of biological cell membranes. In aqueous solutions amphiphilic lipid molecules form self-assembled structures such as bilayer vesicles, inverse hexagonal and multi-lamellar patterns, and so on. Among these lipid assemblies, construction of the lipid bilayer on a solid substrate has long attracted much attention due to the many possibilities it presents for scientific and practical applications [4]. Use of an artificial lipid bilayer often gives insight into important aspects ofbiological cell membranes [5-7]. The wealth of functionality of this artificial structure is the result of its own chemical and physical properties, for example, two-dimensional fluidity, bio-compatibility, elasticity, and rich chemical composition. 

There is increased emphasis throughout Part B on the representation of transition structures to clarify stereoselectivity, including representation by computational models. The current practice of organic synthesis requires a thorough knowledge of molecular architecture and an understanding of how the components of a structure can be assembled. Structures of enantioselective reagents and catalysts are provided to help students appreciate the three-dimensional aspects of the interactions that occur in reactions. 

Self-assembled structures can be closed if all the potential binding sites are utilized, or open if they are not. Closed assemblies have a definite geometry and stoichiometry, while open assemblies exist as mixtures of oligomers or polymers of varying stoichiometry. In addition, the self-assembled structure can be classified as cooperative if the multiple binding interactions reinforce each other to yield enhanced stability, or trivial if the binding interactions do not cooperate in the... 

The stability of a trivial assembly is simply determined by the thermodynamic properties of the discrete intermolecular binding interactions involved. Cooperative assembly processes involve an intramolecular cyclization, and this leads to an enhanced thermodynamic stability compared with the trivial analogs. The increase in stability is quantified by the parameter EM, the effective molarity of the intramolecular process, as first introduced in the study of intramolecular covalent cyclization reactions (6,7). EM is defined as the ratio of the binding constant of the intramolecular interaction to the binding constant of the corresponding intermolecular interaction (Scheme 2). The former can be determined by measuring the stability of the self-assembled structure, and the latter value is determined using simple monofunctional reference compounds. 

The value of EM for a cooperative self-assembled structure provides a measure of the monomer concentration at which trivial polymeric structures start to compete, and therefore EM represents the upper limit of the concentration range within which the cooperative structure is stable (Scheme 2). The lower limit of this range is called the critical self-assembly concentration (csac) and is determined by the stoichiometry of the assembly and the strength of the non-covalent binding interactions weaker interactions and larger numbers of components raise the csac and narrow the stability window of the assembly (8). Theoretical treatments of the thermodynamics of the self-assembly process have been reported by Hunter (8), Sanders (9), and Mandolini (10). The value of EM is lowered by enthalpic contributions associated with... 

The kink in the self-assembled structures of DAP-1 appears to increase the fluidity of... 

Jung, J.-H., John, G., Yoshida, K. and Shimizu, T. (2004) Self-assembling structures of long-chain phenyl glucoside influenced by the introduction of double bonds. Journal of the American Chemical Society, 124 (36), 10674-10675. 

The morphology of the assembled structure was also confirmed by atomic force microscopy (AFM). 

Shenhar, R., Norsten, T.B. and Rotello, V.M. (2005) Polymer-mediated nanoparticle assembly structural control and applications. Advanced Materials, 17, 657-669. 

Controllable Assembly, Structures, and Properties of Lanthanide-Transition Metal-Amino Acid Clusters... 

Abstract Amino acids are the basic building blocks in the chemistry of life. This chapter describes the controllable assembly, structures and properties of lathanide(III)-transition metal-amino acid clusters developed recently by our group. The effects on the assembly of several factors of influence, such as presence of a secondary ligand, lanthanides, crystallization conditions, the ratio of metal ions to amino acids, and transition metal ions have been expounded. The dynamic balance of metalloligands and the substitution of weak coordination bonds account for the occurrence of diverse structures in this series of compounds. 

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