Proteins, self-assembly secondary protein structure

Hydrophobicity is believed to play a major role in organizing the self-assembly of protein molecules. Patterns of hydrophobic versus hydrophilic side chains are very in predicting secondary and tertiary structure simply by virtue of their preferential occurrence on the inside versus outside of various structural features. Those hydrophobicity patterns... 

It is interesting to compare the thermal-treatment effect on the secondary structure of two proteins, namely, bacteriorhodopsin (BR) and photosynthetic reaction centers from Rhodopseudomonas viridis (RC). The investigation was done for three types of samples for each object-solution, LB film, and self-assembled film. Both proteins are membrane ones and are objects of numerous studies, for they play a key role in photosynthesis, providing a light-induced charge transfer through membranes—electrons in the case of RC and protons in the case of BR. 

The self-assembling character of bilayer membranes is demonstrated by the formation of free-standing cast films from aqueous dispersions of synthetic bilayer membranes. The tendencies for association are sufficiently strong to allow the addition of guest molecules (nanoparticles, proteins, and various small molecules) to these films where the connective forces are secondary in nature and not primary. Synthetic polymer chemists have made use of these self-assembling tendencies to synthesize monolayer films. In particular, a monomer that contains both reactive groups and hydrophobic and hydrophilic areas is cast onto an appropriate template that self-assembles the monomer, holding it for subsequent polymerization. Thus, a bilayer structure is formed by... 

Several laboratories have described systems by which synthetic linear peptide chains self-assemble into desirable secondary and tertiary structures. One self-assembly approach has been the creation of a peptide-amphiphile, whereby a peptide head group has the propensity to form a distinct structural element, while a lipophilic tail serves to align the peptide strands and induce secondary and tertiary structure formation, as well as providing a hydrophobic surface for self-association and/or interaction with other surfaces. The preparation of a dialkyl ester tail first involves the acid-catalyzed condensation of H-Glu-OH with the appropriate fatty acid alcohol to form the dialkyl ester of H-Glu-OH a typical example is shown in Scheme 7. The assembly of peptide-amphiphiles with mono- and dialkyl ester tails is shown in Scheme 8. A series of studies have demonstrated that triple-helical and a-helical protein-like molecular architecture is stabilized in the peptide-amphiphile 44,63-65 ... 

Work by Stefan Matile in Geneva, Switzerland, has resulted in a number of interesting [i barrel mimetic anion transporting pores such as 12.38 (Figure 12.17).27 A [5 barrel is a kind of natural protein that forms a rigid channel by self-assembly of peptides into a /3-sheet type of secondary structure. The peptide backbone is mimicked by the rigid octaphenyl backbone which is ca. 3.4 nm long and hence spans... 

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