Mass-based analysis

The acylation of enamines derived from cyclic ketones, which can lead to the acyl ketone or ring expansion (692-694), was studied by NMR and mass spectroscopic analysis of the products (695,696). In a comparative study of the rates of diphenylketene addition to olefins, a pronounced activation was observed in enamines (697). Enamine N- and C-acylation products were obtained from reactions of Schiff s bases (698), vinylogous urethanes (699), cyanamides (699), amides (670,700), and 2-benzylidene-3-methylbenzothiazoline (672) with acid chlorides, anhydrides, and dithio-esters (699). 

A large amount of fuel and environmentally based analysis is focused on the determination of aliphatic and aromatic content. These types of species are often notoriously difficult to deconvolute by mass spectrometric means, and resolution at the isomeric level is almost only possible by using chromatographic methods. Similarly, the areas of organohalogen and flavours/fragrance analysis are dominated by a need to often quantify chiral compounds, which in the same way as aliphatic... 

The red fox (Vulpes vulpes) uses a chemical communication system based on scent marks in urine. Recent work has shown one component of fox urine to be a sulfide. Mass spectral analysis of the pure scent-mark component shows M+ = 116. IR spectroscopy shows an intense band at 890 cm-1, and H NMR spectroscopy reveals the following peaks ... 

Based on gas-liquid chromatographic (GLC) or GLC-mass spectrophotometric analysis. 

The ultimate goal of microarray-based expression analysis is to acquire a comprehension of the entire cellular process, in order to exploit and to standardize the multidi-menisional relations between genotype and phenotype. However, an increasingly important parameter, which has not yet been substantially taken into account, is the role of cellular translation. This means that mRNA expression data need to be correlated with the assortment of proteins actually present in the cell. One approach is based on the use of microarrays containing double-stranded DNA probes for the analysis of DNA-protein interaction and, thus, the detection and identification of DNA-binding proteins by means of fluorescence [130] or mass spectrometry analysis [131]. Moreover, substantial efforts are currently under way to develop protein, antibody, or even cell arrays, applicable to the cor-... 

Instrumentation is also fitted to provide a continuous display of important variables such as temperature and pH, the power used hy the electric motor, airflow, dissolved oxygen and exhaust gas analysis. Manual or computer feedback control can be based either directly on the signals provided hy the prohes and sensors or on derived data calculated from those signals, such as the respiratory coefficient or the rate of change of pH. Mass spectronomical analysis of exhaust gases can provide valuable physiological information. 

ESI-MS has emerged as a powerful technique for the characterization of biomolecules, and is the most versatile ionization technique in existence today. This highly sensitive and soft ionization technique allows mass spectrometric analysis of thermolabile, non-volatile, and polar compounds and produces intact ions from large and complex species in solution. In addition, it has the ability to introduce liquid samples to a mass detector with minimum manipulation. Volatile acids (such as formic acid and acetic acid) are often added to the mobile phase as well to protonate anthocyanins. A chromatogram with only the base peak for every mass spectrum provides more readily interpretable data because of fewer interference peaks. Cleaner mass spectra are achieved if anthocyanins are isolated from other phenolics by the use of C18 solid phase purification. - ... 

Herbach, K.M. et al.. Isotope ratio mass spectrometrical analysis of betanin and isobetanin isolates for authenticity evaluation of purple pitaya-based products. Food Chem., 99, 204, 2006. 

Nelson, R. W., Krone, J. R., and Jansson, O. (1997). Surface plasmon resonance biomolecular interaction analysis mass spectrometry. 1. Chip-based analysis. Anal. Biochem. 69, 4363-4368. 

Krahmer, M. T. Johnson, Y. A. Walters, J. J. Fox, K. F. Fox, A. Nagpal, M. Electrospray quadrupole mass spectrometry analysis of model oligonucleotides and polymerase chain reaction products determination of base substitutions, nucleotide additions/deletions, and chemical modifications. Anal. Chem. 1999, 71, 2893-2900. 

An interesting variation on the whole-cell MALDI approach was recently reported in a study aimed more at FTMS than TOF MS, but the results are nevertheless interesting and important to users of both methods for analysis of bacteria 40. Wilkins s group showed both MALDI-TOF and MALDI-FTMS spectra of whole bacteria grown on isotopic media depleted in C13 and N14. Because most bacterial identification protocols involve a culture step prior to analysis, it is possible to manipulate the sample based on control of the growth media. For mass spectral analysis manipulation of the isotope profile... 

The interaction of cyclopropane with clean surfaces of several metals was studied in our laboratory (42-46), and it was shown that at 273°K self-hydrogenation occurred, resulting in products strongly dependent on the nature of the metal. This conclusion followed from the indirect estimation of the average composition of the chemisorbed layer, based on the mass spectrometric analysis of the gas phase. Furthermore, the products... 

Compare findings with Western blot or mass spectrometry analysis to validate the quantitative measurement using protein-embedded bar code-based image analysis. 

Investigations based on direct mass spectrometry analysis aiming at identifying waxes and other lipids in museum or archaeological items were first carried out at the end of... 

One of the major problems has been to determine the site of attachment of the PAH to the base. Some information may be obtained directly from the nmr spectra eliminating certain points of attachment. As mentioned above, if the C-8 proton of guanine or adenine can be identified, then this cannot be the point of attachment of the carcinogen. Estimation of the pKa s of the adducts either by titration (108) or partition (110) has, however, provided additional valuable information. Mass spectral fragmentation patterns can be of help in determining the site of substitution as well as in determining which bases are involved in binding (108.111-113). Substantial advances have been made in recent years on the mass spectral analysis of involatile compounds and derivatization is not always essential (114-118). X-ray analysis of DNA adducts has, to date, only been applied to model systems (119-121). 

Neomycin is insufficiently volatile for direct mass spectrometric analysis. To overcome this problem Inouye- - prepared the volatile N-salicylidene Schiff s base, the M.S. of which, however, did not exhibit a peak for the molecular ion. To observe the molecular ion it was necessary to use the o-trimethylsilyl ether of the N-salicylidene Schiff s base. The spectrum of N-salicylidene neomycin was found to be dependant on the ion-chamber temperature indicating that thermal decomposition plays a significant part in the fragmentation process. 

Figure 2.2 shows the total ion current trace and a number of appropriate mass chromatograms obtained from the pyrolysis gas chromatography-mass spectrometry analysis of the polluted soil sample. The upper trace represents a part of the total ion current magnified eight times. The peak numbers correspond with the numbers mentioned in Table 2.1 and refer to the identified compounds. The identification was based on manual comparison of mass spectra and relative gas chromatographic retention times with literature data [34, 35] and with data of standards available. In some cases unknown compounds were tentatively identified on the basis of a priori interpretation of their mass spectra (labelled tentative in Table 2.1). 

Fig. 11.4 shows the total ion current trace and some mass chromatograms obtained by flash evaporation pyrolysis gas chromatography-mass spectrometric analysis of the polluted sediment sample. All compounds present in this complex mixture were not listed. A selection was made to exemplify several aspects of the screening approach. The peak number correspond with the numbers in Table 11.1. Identifications were based on the same criteria as mentioned above. Although several components were shown to be real pyrolysis products, all the compounds are present as such in the sample and resulted from simple thermal extraction from the wire. This was shown in separate analyses using ferromagnetic wires with a Curie temperature of 358°C. 

Size-based analysis of SDS-protein complexes in polyacrylamide gels (SDS-PAGE) is the most common type of slab gel electrophoresis for the characterization of polypeptides, and SDS-PAGE is one of the most commonly used methods for the determination of protein molecular masses.117 The uses for size-based techniques include purity determination, molecular size estimation, and identification of posttranslational modifications.118119 Some native protein studies also benefit from size-based separation, e.g., detection of physically interacting oligomers. 

Tan, A., Benetton, S., and Henion, J. D. (2003). Chip-based solid-phase extraction pretreatment for direct electrospray mass spectrometry analysis using an array of monolithic columns in a polymeric substrate. Anal. Chem. 75, 5504—5511. 

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