INDEX enzyme

The ENZYME database at http //www.expasy.ch/enzyme/ provides information on EC number, name, catalytic activity, and hyperlinks to sequence data of enzymes. The 3D structures of enzymes can be accessed via Enzyme Structures Database at http //www.biochem.ucl.ac.uk/bsm/enzyme/index.html. Some other enzyme databases are listed in Table 7.1. 

Enzyme structure database Structures http //www.biochem.ucl.ac.uk/bsm/enzyme/index.html... 

Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). Enzyme Nomenclature Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzyme-Catalysed Reactions. Published in Enzyme Nomenclature 1992 [Academic Press, San Diego, California, ISBN 0-12-227164-5 (hardback), 0-12-227165-3 (paperback)] with Supplement 1 (1993), Supplement 2 (1994), Supplement 3 (1995), Supplement 4 (1997), and Supplement 5 (in Eur.J. Biochem. 1994, 223, 1—5 Eur. J. Biochem. 1995, 232, 1—6 Eur.J. Biochem. 1996, 237, 1—5 Eur. J. Biochem. 1997, 250, 1—6, and Eur.J. Biochem. 1999, 264, 610—650, respectively) [Copyright lUBMB] and online at http //www.chem.qmuLac.uk/iubmb/enzyme/index.html). 

Molecular structures are available for many enzymes and can be viewed at the Web site maintained by the Biomolecular Structure and Modehng Group at University College in London (http //www.biochem.ucl.ac.uk/bsm/enzymes/index.html)... 

Enzymes are excellent catalysts for two reasons great specificity and high turnover rates. With but few exceptions, all reac tions in biological systems are catalyzed by enzymes, and each enzyme usually catalyzes only one reaction. For most of the important enzymes and other proteins, the amino-acid sequences and three-dimensional structures have been determined. When the molecular struc ture of an enzyme is known, a precise molecular weight could be used to state concentration in molar units. However, the amount is usually expressed in terms of catalytic activity because some of the enzyme may be denatured or otherwise inactive. An international unit (lU) of an enzyme is defined as the amount capable of producing one micromole of its reaction product in one minute under its optimal (or some defined) reaction conditions. Specific activity, the activity per unit mass, is an index of enzyme purity. 

Under physiological conditions, [S] is seldom saturating, and itself is not particularly informative. That is, the in vivo ratio of [S]/A , usually falls in the range of 0.01 to 1.0, so active sites often are not filled with substrate. Nevertheless, we can derive a meaningful index of the efficiency of Michaelis-Menten-type enzymes under these conditions by employing the following equations. As presented in Equation (14.23), if... 

That is, k t/K,n is an apparent second-order rate constant ior the reaction of E and S to form product. Because A , is inversely proportional to the affinity of the enzyme for its substrate and is directly proportional to the kinetic efficiency of the enzyme, A , provides an index of the catalytic efficiency of an enzyme operating at substrate concentrations substantially below saturation amounts. 

Index of Review Articles and Specialist Texts Table 18 Metal-containing Enzymes... 

The Michaelis constant (fCM) is an index of the stability of an enzyme-substrate complex. Does a high Michaelis constant indicate a stable or an unstable enzyme-substrate complex Explain your reasoning. 

Following massive crush injury, myoglobin released from damaged muscle fibers colors the urine dark red. Myoglobin can be detected in plasma following a myocardial infarction, but assay of serum enzymes (see Chapter 7) provides a more sensitive index of myocardial injury. 

The activation of apo-transketolase(the enzyme protein) in erythrocyte lysate by thiamin diphosphate added in vitro has become the accepted index of thiamin nutritional status. 

As 1,2,5-thiadiazole analogues, potent HlV-1 reverse transcriptase inhibitors, some simple 1,2,5-oxadiazoles, compounds 4-6 (Fig. 9), have been synthesized using the traditional Wieland procedure as key for the heterocycle formation [121]. Such as thiadiazole parent compounds, derivative with chlorine atoms on the phenyl ring, i.e., 5, showed the best anti-viral activity. Selectivity index (ratio of cytotoxic concentration to effective concentration) ranked in the order of 5 > 6 > 4. The activity of Fz derivative 6 proved the N-oxide lack of relevance in the studied bioactivity. These products have been claimed in an invention patent [122]. On the other hand, compound 7 (Fig. 9) was evaluated for its nitric oxide (NO)-releasing property (see below) as modulator of the catalytic activity of HlV-1 reverse transcriptase. It was found that NO inhibited dose-dependently the enzyme activity, which is hkely due to oxidation of Cys residues [123]. 

The HlV-1 protease is responsible for processing the protein precursors to the enzymes (integrase, protease and reverse transcriptase) and the structural proteins of the HIV-1 virus. Maw and Hall found that topological indices provide rehable QSAR models for the IC50 data of 32 HIV-1 protease inhibitors [29]. The best QSAR model, with r = 0.86, s=0.60 and q = 0.79, was obtained with the shape index Ka, the connechvity index the sum of HE-state indices for ah groups that act as... 

E I is a kinetic chimera Kj and kt are the constants characterizing the inactivation process kt is the first-order rate constant for inactivation at infinite inhibitor concentration and K, is the counterpart of the Michaelis constant. The k,/K, ratio is an index of the inhibitory potency. The parameters K, and k, are determined by analyzing the data obtained by using the incubation method or the progress curve method. In the incubation method, the pseudo-first-order constants /cobs are determined from the slopes of the semilogarithmic plots of remaining enzyme activity... 

Creatine kinase, creatine kinase myocardial band Creatine kinase (CK) enzymes are found in many isoforms, with varying concentrations depending on the type of tissue. Creatine kinase is a general term used to describe the nonspecific total release of all types of CK, including that found in skeletal muscle (MM), brain (BB) and heart (MB). CK MB is released into the blood from necrotic myocytes in response to infarction and is a useful laboratory test for diagnosing myocardial infarction. If the total CK is elevated, then the relative index (RI), or fraction of the total that is composed of CK MB, is calculated as follows RI = (CK MB/CK total) x 100. An RI greater than 2 is typically diagnostic of infarction. 

The partitioning of the activated inhibitor between direct covalent inactivation of the enzyme and release into solution is an important issue for mechanism-based inactivators. The partition ratio is of value as a quantitative measure of inactivation efficiency, as described above. This value is also important in assessing the suitability of a compound as a drug for clinical use. If the partition ratio is high, this means that a significant proportion of the activated inhibitor molecules is not sequestered as a covalent adduct with the target enzyme but instead is released into solution. Once released, the compound can diffuse away to covalently modify other proteins within the cell, tissue, or systemic circulation. This could then lead to the same types of potential clinical liabilities that were discussed earlier in this chapter in the context of affinity labels, and would therefore erode the potential therapeutic index for such a compound. 

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