Active-site

The term active sites was introduced by Taylor [8] in 1925 in the following way A surface may be regarded as composed of atoms in varied degrees of saturation by neighbouring metal atoms. The varpng degree of saturation of the catalyst atoms also 

These examples illustrate not only the role of active sites but also how complex their role is for macroscopic kinetics. This leads us to the general problem of how to define catalytic activity. 

FIGURE 5.3. Arrhenius diagram Oog Sq versus 1/7) for the sticking coefficient for dissociative nitrogen surface at a Ru(0001) surface, and the influence of a small concentration of Au atoms blocking the active sites at the steps [12]. 

FIGURE 5.4. STM image from a Al(l 11) surface with a small concentration of S atoms that preferentially segregate to the steps. 

Chemistry and Technology of Isobutane/Alkene Alkylation Catalyzed by Liquid and Solid Acids 

Lewis Acid Sites and Extra-Framework Aluminum. . 260 

Alkane/Alkene Ratio and Alkene Space Velocity. .. 274 

Catalytic Conversion of Methane to Synthesis Gas by Partial Oxidation and CO2 Reforming 

Numbers in parentheses indicate the pages on which the authors contributions begin. 

Chemistry and Technology of Isohutane/Alkene Alkylation Catalyzed hy Liquid and Solid Acids 

Andreas Feller, Institut fiir Technische Chemie, Technische Universitdt Munchen, D-85747 Garcfling, Germany (229) 

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The sequence of events in a surface-catalyzed reaction comprises (1) diffusion of reactants to the surface (usually considered to be fast) (2) adsorption of the reactants on the surface (slow if activated) (3) surface diffusion of reactants to active sites (if the adsorption is mobile) (4) reaction of the adsorbed species (often rate-determining) (5) desorption of the reaction products (often slow) and (6) diffusion of the products away from the surface. Processes 1 and 6 may be rate-determining where one is dealing with a porous catalyst [197]. The situation is illustrated in Fig. XVIII-22 (see also Ref. 198 notice in the figure the variety of processes that may be present). 

The site specificity of reaction can also be a state-dependent site specificity, that is, molecules incident in different quantum states react more readily at different sites. This has recently been demonstrated by Kroes and co-workers for the Fl2/Cu(100) system [66]. Additionally, we can find reactivity dominated by certain sites, while inelastic collisions leading to changes in the rotational or vibrational states of the scattering molecules occur primarily at other sites. This spatial separation of the active site according to the change of state occurring (dissociation, vibrational excitation etc) is a very surface specific phenomenon. 

A catalyst is a material that accelerates a reaction rate towards thennodynamic equilibrium conversion without itself being consumed in the reaction. Reactions occur on catalysts at particular sites, called active sites , which may have different electronic and geometric structures than neighbouring sites. Catalytic reactions are at the heart of many chemical industries, and account for a large fraction of worldwide chemical production. Research into fiindamental aspects of catalytic reactions has a strong economic motivating factor a better understanding of the catalytic process... 

First, it is possible to excite a chromophore corresponding to the active site, and detennine which modes interact with it. Second, by using UV excitation, the amino acids with phenyl rings (tryptophan and tyrosine, and a small contribution from phenylalanine) can be selectively excited [4], The frequency shifts in the resonance Raman spectrum associated with them provide infomiation on their enviromnent. 

Figure C1.5.17.(A) Enzymatic cycle of cholesterol oxidase, which catalyses tire oxidation of cholesterol by molecular oxygen. The enzyme s naturally fluorescent FAD active site is first reduced by a cholesterol substrate,...

Catalysis in a single fluid phase (liquid, gas or supercritical fluid) is called homogeneous catalysis because the phase in which it occurs is relatively unifonn or homogeneous. The catalyst may be molecular or ionic. Catalysis at an interface (usually a solid surface) is called heterogeneous catalysis, an implication of this tenn is that more than one phase is present in the reactor, and the reactants are usually concentrated in a fluid phase in contact with the catalyst, e.g., a gas in contact with a solid. Most catalysts used in the largest teclmological processes are solids. The tenn catalytic site (or active site) describes the groups on the surface to which reactants bond for catalysis to occur the identities of the catalytic sites are often unknown because most solid surfaces are nonunifonn in stmcture and composition and difficult to characterize well, and the active sites often constitute a small minority of the surface sites. 

The Ru surface is one of the simplest known, but, like virtually all surfaces, it includes defects, evident as a step in figure C2.7.6. The observations show that the sites where the NO dissociates (active sites) are such steps. The evidence for this conclusion is the locations of the N and O atoms there are gradients in the surface concentrations of these elements, indicating that the transport (diffusion) of the O atoms is more rapid than that of the N atoms thus, the slow-moving N atoms are markers for the sites where the dissociation reaction must have occurred, where their surface concentrations are highest. 

An alternative to elucidating the active sites on a surface is to synthesize them. For example, a new catalyst for metathesis of alkanes. 

The data led to tire cycle shown in figure C2.7.8. Here, only tire active site on tire interior enzyme surface (section C2.6) is depicted, consisting of R groups including aspartic acid, glutamic acid and otliers, represented witli tire shortliand Asp, Glu etc tire subscripts represent tlie positions on tlie polypeptide chain. 

Zambelli T, Wintterlin J and ErtI G 1996 Identification of the active sites of a surface-catalyzed reaction Soienoe 273 1688-90... 

Anotlier important modification metliod is tire passivation of tire external crystallite surface, which may improve perfonnance in shape selective catalysis (see C2.12.7). Treatment of zeolites witli alkoxysilanes, SiCl or silane, and subsequent hydrolysis or poisoning witli bulky bases, organophosphoms compounds and arylsilanes have been used for tliis purjDose [39]. In some cases, tire improved perfonnance was, however, not related to tire masking of unselective active sites on tire outer surface but ratlier to a narrowing of tire pore diameters due to silica deposits. 

Both methods suggest that the chemical structure of A A (cis double bonds connected by two single bonds) allows the fatty acid to access the cyclooxygenase active site of PGHS-1 through a narrow hydrophobic channel and to bind in a shape favorable for the cyclooxygenation reaction. 

Jedrzejas, M. J., Singh, S. Brouillette, W. J. Air, G. M. Luo, M. A. 1995. Strategy for theoretical binding constant, Ki calculation for neuraminidase aromatic inhibitors, designed on the basis of the active site structure of influenza virus neuraminidase. Proteins Struct. Funct. Genet. 23 (1995) 264-277... 

Klapper, I., Hagstrom, R., Fine, R., Sharp, K., Honig, B. Focusing of electric fields in the active site of cu,zn superoxide dismutase. Proteins Struct. Pune. Genet. 1 (1986) 47-79. 

Zhang, Z.-Y., Dixon, J. E. Active site labeling of the yersinia protein tyrosine phosphatase The determination of the pKa of active site cysteine and the function of the conserved histidine 402. Biochem. 32 (1993) 9340-9345. 

R. C. Wade, M. E. Davis, B. A. Luty, J. D. Madura, and J. A. McCammon. Gating of the active site of triose phosphate isomerase Brownian dynamics simulations of flexible peptide loops in the enzyme. Biophys. J., 64 9-15, 1993. 

The molecular surface of receptor site regions cannot be derived from the structure infoi mation of the molecule, bth represents the form ofthe active site of a protein surrounded by a ligand. This surface representation is employed in drug design in order to illustrate the volume of the pocket region or the molecular interaction layers [186. ... 

For many applications, especially studies on enzyme reaction mechanisms, we do not need to treat the entire system quantum mechanically. It is often sufficient to treat the center of interest (e.g., the active site and the reacting molecules) quantum mechanically. The rest of the molecule can be treated using classical molecular mechanics (MM see Section 7.2). The quantum mechanical technique can be ab-initio, DFT or semi-empirical. Many such techniques have been proposed and have been reviewed and classified by Thiel and co-workers [50] Two effects of the MM environment must be incorporated into the quantum mechanical system. 

Example Yon can monitor improper torsion angles to determine wh ich side of a substrate m olecn le faces the active site of a protein. Select three atoms on the substrate molecule and a fourth in the active site. These atom s define an improper torsion angle. Save th is selection as a named selection. Then observe a plot of this improper torsion angle (in the Molecular Dynam ics Results dialog... 

This argument is sound if we imagine Che number of active sites per unit surface area to remain constant as the pore size is changed. However, if the number of active sites per unit pellet volume remains constant, will be independent of d, and then 1/ d. Neither of these re-... 

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