Proteins surface binding

For example, our preliminary MALDI MS studies employed a somewhat unconventional sample preparation approach in which the protein deposition step preceded the matrix deposition step. (In the conventional approach, the protein is co-deposited with the MALDI matrix solution.). .. Thus, in the first/next/colleclively group of experiments, we will explore different sample preparation methods to determine if other protocols also lead to an inverse relationship between surface-protein binding affinity and the MALDI ion signal. 

These studies will be followed with experiments that examine the influence of the matrix solvent on the inverse surface-protein binding affinity/MALDI ion signal relationship. 

Viruses contain RNA segments that encode for specific proteins encapsulated in a surrounding envelope of protein, lipid bilayer, and external proteins that protrude from the viral surface (Figure 5.3.12). The surface proteins bind to surface receptors of the host cell (Figure 5.3.13), whereby the viral RNA strands move into the cell nucleus. Viral RNA strands encode mRNAs... 

Dave S, Brooks- lter A, Pangbum MK et al. PspC, a pneumococcal surface protein, binds human factor H. Infect Immun 2001 69(5) 3435-3437. 

The absorption of sulfonylureas from the upper gastrointestinal tract is faidy rapid and complete. The agents are transported in the blood as protein-bound complexes. As they are released from protein-binding sites, the free (unbound) form becomes available for diffusion into tissues and to sites of action. Specific receptors are present on pancreatic islet P-ceU surfaces which bind sulfonylureas with high affinity. Binding of sulfonylureas to these receptors appears to be coupled to an ATP-sensitive channel to stimulate insulin secretion. These agents may also potentiate insulin-stimulated glucose transport in adipose tissue and skeletal muscle. 

Most sequence-specific regulatory proteins bind to their DNA targets by presenting an a helix or a pair of antiparallel p strands to the major groove of DNA. Recognition of the TATA box by TBP is therefore exceptional it utilizes a concave pleated sheet protein surface that interacts with the minor groove of DNA. Since the minor groove has very few sequence-specific... 

Figure 15.25 Ribbon digram for the first two domains of CD4. The G strand of domain 1 is contiguous with the A strand of domain 2. The C" ridge has been implicated in binding to the HIV surface protein, gpI20.

C, which is found in complement proteins FI, F2, and F3, first found in fibronectin I, the immunoglobulin superfamily domain N, found in some growth factor receptors E, a module homologous to the calcium-binding E-F hand domain and LB, a lectin module found in some cell surface proteins. (Adapted from Baron, M., Norman, D., and Campbell, I., 1991, Protein modnles. Trends in Biochemical Sciences 16 13—1 7.)... 

The influenza virus inhibitors, zanamivir, and oseltamivir, act outside the cell after virus particles have been formed. The dtugs have been designed to fit into the active site of the viral envelope enzyme neuraminidase, which is required to cleave sialic acid off the surface of the producing cells. When its activity is blocked, new virus particles stay attached to the cell surface through binding of the virus protein hemagglutinin to sialic acid and are prevented from spreading to other cells. 

Forty-four amino acid module characterized by three internal disulfide bridges and an octahedrical cage for a calcium ion. Complement-type repeats are found in many cell surface proteins and form the ligand-binding domain of receptors of the LDL receptor gene family. 

Proteins are degraded by both ATP-dependent and ATP-independent pathways. Ubiquitin targets many intracellular proteins for degradation. Liver cell surface receptors bind and internalize circulating asialoglycoproteins destined for lysosomal degradation. 

Retention in HIC can be described in terms of the solvophobic theory, in which the change in free energy on protein binding to the stationary phase with the salt concentration in the mobile phase is determined mainly by the contact surface area between the protein and stationary phase and the nature of the salt as measured by its propensity to increase the surface tension of aqueous solutions [331,333-338]. In simple terms the solvopbobic theory predicts that the log u ithn of the capacity factor should be linearly dependent on the surface tension of the mobile phase, which in turn, is a llne2u function of the salt concentration. At sufficiently high salt concentration the electrostatic contribution to retention can be considered constant, and in the absence of specific salt-protein interactions, log k should depend linearly on salt concentration as described by equation (4.21)... 

There are various inhibitors within the coagulation system that counterregulate activation of the coagulation cascade. Among them, antithrombin III (AT-III) and protein C (PC) are the most important (SI). AT-III binds in the presence of heparin the activated factors F-IXa, F-Xa, and F-IIa (thrombin). PC is activated by a complex formed between thrombin and thrombomodulin, a surface protein of endothelial cells. Once activated, PC in the presence of protein S (PS) specifically degrades activated factors F-Va and F-VIIIa. PC decreases in the course of sepsis in relation to the severity of the condition (L15). Experimental studies have... 

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