Virus particles

Figure 16.1 Viruses vary in size and shape from the simplest satellite viruses (a) that need another virus for their replication to the T-even bacteriophages (d) that have developed sophisticated mechanisms for injecting DNA into bacteria. Four different virus particles are shown to scale.

Two basic principles govern the arrangement of protein subunits within the shells of spherical viruses. The first is specificity subunits must recognize each other with precision to form an exact interface of noncovalent interactions because virus particles assemble spontaneously from their individual components. The second principle is genetic economy the shell is built up from many copies of a few kinds of subunits. These principles together imply symmetry specific, repeated bonding patterns of identical building blocks lead to a symmetric final structure. 

As examples of such quasi-equivalent arrangement of subunits, we will examine the T = 3 and T = 4 packing modes, both of which are found in known virus particles. In the T = 3 structure, which has 180 subunits (3 x 60),... 

Figure 16.8 Architecture of the tomato bushy stunt virus particle. The polypeptide chain of each subunit folds into three domains (R, S, P) with a 35-residue connecting arm (a) between R and S and a hinge (h) between S and P.

Figure 16.10 The arms of all 60 C subunits in tomato bushy stunt virus form an internal framework, (a) Configuration of interdigitated arms from the three C subunits, viewed down a threefold axis. The p strands are shown as arrows, (b) Cutaway view of the virus particle, emphasizing the framework function of the C-subunit arms. These arms are shown as chains of small balls, one per residue. The region where three arms meet and interdigitate is shown schematically in (a). The main part of each subunit is represented by large balls. Only about one hemisphere of these is drawn, but all the C-subunit arms are included.

Rossmann suggested that the canyons form the binding site for the rhi-novirus receptor on the surface of the host cells. The receptor for the major group of rhinoviruses is an adhesion protein known as lCAM-1. Cryoelectron microscopic studies have since shown that ICAM-1 indeed binds at the canyon site. Such electron micrographs of single virus particles have a low resolution and details are not visible. However, it is possible to model components, whose structure is known to high resolution, into the electron microscope pictures and in this way obtain rather detailed information, an approach pioneered in studies of muscle proteins as described in Chapter 14. 

Figure 16.23 Overview of the structure of the SV40 virus particle, showing the packing of pentamers. The subunits of pentamers on fivefold positions are shown in white those of pentamers in six-coordinated positions are shown in colors. The six colors indicate six quite different environments for the subunit. (Courtesy of S. Harrison.)...

Vibrio (i) Curved, rod-shaped bacterial cell, (ii) Bacterium of the genus Vibrio. Virion Virus particle the virus nucleic acid surrounded by protein coat and in some cases other material. 

FIGURE 1.25 The virus life cycle. Viruses are mobile bits of genetic iuformatiou encapsulated in a protein coat. The genetic material can be either DNA or RNA. Once this genetic material gains entry to its host cell, it takes over the host machinery for macromolecular synthesis and subverts it to the synthesis of viral-specific nucleic acids and proteins. These virus components are then assembled into mature virus particles that are released from the cell. Often, this parasitic cycle of virus infection leads to cell death and disease. 

NUCLEOPROTEINS. Nucleoprotein conjugates have many roles in the storage and transmission of genetic information. Ribosomes are the sites of protein synthesis. Virus particles and even chromosomes are protein-nucleic acid complexes. 

Tannic acid is a strong inhibitor of virus particles in vitro. It inactivated both TMV and TMV-RNA by forming noninfectious complexes (1). TMV-RNA was much more sensitive to inactivation than was whole TMV. It would thus appear that tannic acid could possibly inactivate TMV by reacting with either the protein coat or the RNA core. 

The influenza virus inhibitors, zanamivir, and oseltamivir, act outside the cell after virus particles have been formed. The dtugs have been designed to fit into the active site of the viral envelope enzyme neuraminidase, which is required to cleave sialic acid off the surface of the producing cells. When its activity is blocked, new virus particles stay attached to the cell surface through binding of the virus protein hemagglutinin to sialic acid and are prevented from spreading to other cells. 

Some bioreactor systems must be completely protected from microbial contamination, meaning that not a single alien bacterium or virus particle can be allowed to penetrate the system. Reliable and economical systems need to be developed to achieve this level of contamination prevention. Along with the need for prevention is the need to be able to detect contamination at a level of a few microorganisms in a hundred kiloliters of medium. This degree of detection is not yet achievable. Research could vastly improve the crude detection methods that are used today. 

Initially, it was assumed that the HlV-1 population is infinite, evolution is deterministic, and antiretroviral resistance development is definite (Coffin 1995). However, our research amongst others has demonstrated that the effective population size, defined as the average number of HIV variants that produces infectious progeny is relatively small (Leigh Brown 1997 Leigh Brown and Richman 1997 Nijhnis et al. 1998). This can be explained because the majority of virus particles that are produced harbor deleterious mutations resulting in noninfectious virus. Also limited target cell availability and inactivation of potentially infectious viruses by the host... 

Viruses are discussed more fully elsewhere (Chapter 3). However, there are certain groups of viruses, called bacteriophages (phages), which can attack bacteria. This attack involves the injechon of viral DNA into baeterial eells which then proceed to make new virus particles and destroy eells. Some viruses, known as temperate viruses, do not cause this catastrophic event when they infect their host, but can pass genetic material from one cell to another. 

Fig. 3.1 The morphology of a variety of virus particles. The large circle indicates the relative size of a staphylococcus cell.

An icosahedral virus particle composed of 252 capsomeres 240 being hexons and 12 being pentons... 

Some virus particles have their protein subunits symmetrically packed in a helical array, forming hollow cylinders. The tobacco mosaic virus (TMV) is the classic example. X-ray diffraction data and electron micrographs have revealed that 16 subunits per turn of the helix project from a central axial hole that runs the length of the particle. The nucleic acid does not lie in this hole, but is embedded into ridges on the inside of each subunit and describes its own helix from one end of the particle to the other. 

Helical symmetry was thought at one time to exist only in plant viruses. It is now known, however, to occur in a number of animal virus particles. The influenza and mumps viruses, for example, which were first seen in early electron micrographs as roughly spherical particles, have now been observed as enveloped particles within the envelope, the capsids themselves are helically symmetrical and appear similar to the rods of TMV, except that they are more flexible and are wound like coils of rope in the centre of the particle. 

Specific proteins on the surface of virus particles, e.g. the haemagglutinins of influenza viruses (Fig. 3.8), mediate their adherence to glycoprotein receptors in the plasma membrane of host cells. Viruses make use of a variety of membrane glycoproteins as... 

Fig. 11.7 A, diagrammatic representation of plaque assay for evaluating virucidal activity and B, monolayers of baby hamster ki(hiey (BHK) cells C, virus tte untreated virus (o represents a plaque-forming unit, pfu, in BHK cells) D, virus titre disinfectant-treated virus (before plating onto BHK, die disinfectant must be neuh alized in an appropriate manner). Note the greatly reduced nimiber of pfu in D, indicative of fewer iminactivated virus particles than in C. 

Moulds and yeasts show varying responses to biocides. These organisms are often important in the pharmaceutical context because they may cause spoilage of formulated products. Various types of protozoa are potentially pathogenic and inactivation by biocides may be problematic. Viral response to biocides depends upon the type and structure of the virus particle and on the nature of the biocide. 

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