Protein pleated sheet

Fig. 30. Schematic representation of vertical cross section of nacre showing alternating layers of mineralizing matrix (hexagons) and carrier protein (pleated sheet conformation). The CaC03 has been omitted for graphical reasons...

Section 27 19 Two secondary structures of proteins are particularly prominent The pleated sheet is stabilized by hydrogen bonds between N—H and C=0 groups of adjacent chains The a helix is stabilized by hydrogen bonds within a single polypeptide chain... 

Fig. 2. Protein secondary stmcture (a) the right-handed a-helix, stabilized by intrasegmental hydrogen-bonding between the backbone CO of residue i and the NH of residue t + 4 along the polypeptide chain. Each turn of the helix requires 3.6 residues. Translation along the hehcal axis is 0.15 nm per residue, or 0.54 nm per turn and (b) the -pleated sheet where the polypeptide is in an extended conformation and backbone hydrogen-bonding occurs between residues on adjacent strands. Here, the backbone CO and NH atoms are in the plane of the page and the amino acid side chains extend from C ...

Secondary Structure. The silkworm cocoon and spider dragline silks are characterized as an antiparaHel P-pleated sheet wherein the polymer chain axis is parallel to the fiber axis. Other silks are known to form a-hehcal (bees, wasps, ants) or cross- P-sheet (many insects) stmctures. The cross-P-sheets are characterized by a polymer chain axis perpendicular to the fiber axis and a higher serine content. Most silks assume a range of different secondary stmctures during processing from soluble protein in the glands to insoluble spun fibers. 

Chofhia, C., Levitt, M., Richardson, D. Structure of proteins packing of a-helices and pleated sheets. 

Chothia, C. Conformation of twisted p-pleated sheets in proteins. /. Mol. Biol. 75 295-302, 1973. 

Chothia, C., Janin, J. Orthogonal packing of p-pleated sheets in proteins. Biochemistry 21 3955-3965, 1982. 

Most sequence-specific regulatory proteins bind to their DNA targets by presenting an a helix or a pair of antiparallel p strands to the major groove of DNA. Recognition of the TATA box by TBP is therefore exceptional it utilizes a concave pleated sheet protein surface that interacts with the minor groove of DNA. Since the minor groove has very few sequence-specific... 

The secondary structures we have described here are all found commonly in proteins in nature. In fact, it is hard to find proteins that do not contain one or more of these structures. The energetic (mostly H-bond) stabilization afforded by a-helices, /3-pleated sheets, and /3-turns is important to proteins, and they seize the opportunity to form such structures wherever possible. 

Figure 26.6 (a) The /3-pleated sheet secondary structure of proteins is stabilized by hydrogen bonds between parallel or antiparallel chains, (b) The structure of concanavalin A, a protein with extensive regions of antiparallel / sheets, shown as flat ribbons. 

Proteins have four levels of structure. Primary structure describes a protein s amino acid sequence secondary structure describes how segments of the protein chain orient into regular patterns—either a-helix or /3-pleated sheet tertiary structure describes how the entire protein molecule coils into an overall three-dimensional shape and quaternary structure describes how individual protein molecules aggregate into larger structures. 

Michael reactions and, 895 Beta-keto ester, 851 alkylation of, 859-860 cyclic, 892-893 decarboxylation of, 857, 860 Michael reactions and. 895 pKd of, 852 synthesis of, 892-893 Beta-lactam antibiotics, 824-825 Beta oxidation pathway, 1133-1137 mechanism of, 1133-1136 Beta-pleated sheet (protein), 1038 molecular model of, 1039 secondary protein structure and, 1038-1039 Betaine, 720 Bextra. structure of, 544 BHA, synthesis of, 629 BHT, synthesis of. 629 Bicycloalkane. 129 Bijvoet. J. M., 299 Bimolecular, 363... 

Although other secondary protein structures play roles in determining the shapes of proteins, the helix and pleated sheet occur most frequently. A discussion of less common secondary structures is beyond the scope of this text. 

Ribbon views of proteins with varying amounts of helices and pleated sheets. Immunoglobulin, an antibody, is made up almost entirely of pleated sheets (magenta). Myoglobin, which stores oxygen in muscle tissue, is composed of about 70% helix (blue). G-Actin, a component of muscle protein fibers, is a complex mixture of helices and pleated sheets. Regions with no specific secondaiy stmcture are shown in orange. 

Other fibrous proteins contain extensive regions of pleated sheets. The fibers spun by a silkworm, for example, are made almost entirely of fibroin, a protein composed primarily of just three amino acids glycine (45%), alanine (30%), and serine (12%). Each chain of fibroin contains extensive regions where a sequence of six amino acids occurs repeatedly . .. -Gly-Ser-Gly-Ala-Gly-Ala-. .. Notice that every other amino acid is glycine, which is the smallest amino acid. This alternating arrangement is an important feature in the packing of the strands that make up the pleated sheet. 

The essential distinction between the approaches used to formulate and evaluate proteins, compared with conventional low molecular weight drugs, lies in the need to maintain several levels of protein structure and the unique chemical and physical properties that these higher-order structures convey. Proteins are condensation polymers of amino acids, joined by peptide bonds. The levels of protein architecture are typically described in terms of the four orders of structure [23,24] depicted in Fig. 2. The primary structure refers to the sequence of amino acids and the location of any disulfide bonds. Secondary structure is derived from the steric relations of amino acid residues that are close to one another. The alpha-helix and beta-pleated sheet are examples of periodic secondary structure. Tertiary... 

X-ray diffraction analysis reveals the three-dimensional structure of both IL-l molecules to be quite similar. Both are globular proteins, composed of six strands of antiparallel P pleated sheet forming a barrel that is closed at one end by a further series of P sheets. 

Monomeric TNF is biologically inactive the active form is a homotrimer in which the three monomers associate non-covalently about a threefold axis of symmetry, forming a compact bellshaped structure. X-ray crystallographic studies reveal that each monomer is elongated and characterized by a large content of antiparallel P pleated sheet, which closely resembles subunit proteins of many viral caspids (Figure 9.4). 

The p-pleated sheet structure occurs in fibrous as well as globular proteins and is formed by intermolecular hydrogen bonds between a carboxyl group oxygen of one amino acid and an amine hydrogen of an adjacent polypeptide chain. Parallel p-pleated sheets form when the adjacent polypeptide chains are oriented in one direction (from N-terminal to C-terminal end or vice versa). Antiparallel p-pleated... 

The two protein subunits found in the holoenzyme, each containing an iron-sulfur cluster, fold into interconnected a-helices and p-pleated sheet that, at their interface, ligate the 4Fe-4S cluster through four cysteine residues, two from each... 

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