Mass spectrometry compounds

Kester [5] has discussed the application of the purge and trap gas chromatographic method to the determination of aliphatic chloro-compounds in soil. Following methanol extraction of the soil the extract is gas purged and the purge gases trapped on a Tenax silica gel/ charcoal trap followed by thermal desorption from the trap and examination by gas chromatography and mass spectrometry. Compounds that have been determined by this method are listed in Table 5.1. 

Current detection limits are < 1 ng for full scan mass spectra and < 1 pg for multiple ion monitoring mass spectrometry. Compound identifications are based on the comparisons with authentic standards, GC retention time, literature mass spectra and the interpretation of mass spectrometric fragmentation patterns. The MS methods used for the various markers and studies are listed in Table 1. 

In contrast to IR and NMR spectroscopy, the principle of mass spectrometry (MS) is based on decomposition and reactions of organic molecules on theii way from the ion source to the detector. Consequently, structure-MS correlation is basically a matter of relating reactions to the signals in a mass spectrum. The chemical structure information contained in mass spectra is difficult to extract because of the complicated relationships between MS data and chemical structures. The aim of spectra evaluation can be either the identification of a compound or the interpretation of spectral data in order to elucidate the chemical structure [78-80],... 

Section 13 22 Mass spectrometry exploits the information obtained when a molecule is ionized by electron impact and then dissociates to smaller fragments Pos itive ions are separated and detected according to their mass to charge (m/z) ratio By examining the fragments and by knowing how classes of molecules dissociate on electron impact one can deduce the structure of a compound Mass spectrometry is quite sensitive as little as 10 g of compound is sufficient for analysis... 

Present day techniques for structure determination in carbohydrate chemistry are sub stantially the same as those for any other type of compound The full range of modern instrumental methods including mass spectrometry and infrared and nuclear magnetic resonance spectroscopy is brought to bear on the problem If the unknown substance is crystalline X ray diffraction can provide precise structural information that m the best cases IS equivalent to taking a three dimensional photograph of the molecule... 

Isopropyl group (Section 2 13) The group (CH3)2CH— Isotactic polymer (Section 7 15) A stereoregular polymer in which the substituent at each successive chirality center is on the same side of the zigzag carbon chain Isotopic cluster (Section 13 22) In mass spectrometry a group of peaks that differ in m/z because they incorporate differ ent isotopes of their component elements lUPAC nomenclature (Section 2 11) The most widely used method of naming organic compounds It uses a set of rules proposed and periodically revised by the International Union of Pure and Applied Chemistry... 

The main difference between field ionization (FI) and field desorption ionization (FD) lies in the manner in which the sample is examined. For FI, the substance under investigation is heated in a vacuum so as to volatilize it onto an ionization surface. In FD, the substance to be examined is placed directly onto the surface before ionization is implemented. FI is quite satisfactory for volatile, thermally stable compounds, but FD is needed for nonvolatile and/or thermally labile substances. Therefore, most FI sources are arranged to function also as FD sources, and the technique is known as FI/FD mass spectrometry. 

This example can be used in reverse to show the usefulness of looking for such isotopes. Suppose there were an unknown sample that had two molecular ion peaks in the ratio of 3 1 that were two mass units apart then it could reasonably be deduced that it was highly likely the unknown contained chlorine. In this case, the isotope ratio has been used to identify a chlorine-containing compound. This use of mass spectrometry is widespread in general analysis of materials, and it... 

Standard El spectra are obtained with an electron energy of 70 eV (electrons accelerated through 70 V). For most compounds, it is easier to produce positive ions than negative ones, and most El mass spectrometry is concerned with positive ions. 

Routine mass spectrometry can be used to identify many elements from their approximate ratios of isotope abundances. For example, mercury-containing compounds give ions having the seven isotopes in an approximate ratio of 0.2 10.1 17.0 23.1 13.2 29.7 6.8. 

It is recommended that the convention used by Budzikiewicz, Djerassi, and Williams (Mass Spectrometry of Organic Compounds, Holden-Day, 1967, p. 2) be followed in referring to a-cleavage as fission of a bond originating at an atom which is adjacent to the one assumed to bear the charge the definition of p-, y-, then follows automatically. The process ... 

Litzow, M.R. and Spalding, T.R., Mass Spectrometry of Inorganic and Organometallic Compounds, Elsevier, Amsterdam, 1973. 

Inductively coupled plasma (icp) emission, direct current plasma (dcp), and inductively coupled plasma mass spectrometry (icp/ms) have taken over as the methods of choice for the simultaneous detection of metallic impurities in hafnium and hafnium compounds (29,30). 

The deterrnination of hydrogen content of an organic compound consists of complete combustion of a known quantity of the material to produce water and carbon dioxide, and deterrnination of the amount of water. The amount of hydrogen present in the initial material is calculated from the amount of water produced. This technique can be performed on macro (0.1—0.2 g), micro (2—10 mg), or submicro (0.02—0.2 mg) scale. Micro deterrninations are the most common. There are many variations of the method of combustion and deterrnination of water (221,222). The oldest and probably most reUable technique for water deterrnination is a gravimetric one where the water is absorbed onto a desiccant, such as magnesium perchlorate. In the macro technique, which is the most accurate, hydrogen content of a compound can be routinely deterrnined to within 0.02%. Instmmental methods, such as gas chromatography (qv) (223) and mass spectrometry (qv) (224), can also be used to determine water of combustion. 

Ideally, a mass spectmm contains a molecular ion, corresponding to the molecular mass of the analyte, as well as stmcturaHy significant fragment ions which allow either the direct deterrnination of stmcture or a comparison to Hbraries of spectra of known compounds. Mass spectrometry (ms) is unique in its abiUty to determine direcdy the molecular mass of a sample. Other techniques such as nuclear magnetic resonance (nmr) and infrared spectroscopy give stmctural information from which the molecular mass may be inferred (see Infrared technology and raman spectroscopy Magnetic spin resonance). 

Quantitative mass spectrometry, also used for pharmaceutical appHcations, involves the use of isotopicaHy labeled internal standards for method calibration and the calculation of percent recoveries (9). Maximum sensitivity is obtained when the mass spectrometer is set to monitor only a few ions, which are characteristic of the target compounds to be quantified, a procedure known as the selected ion monitoring mode (sim). When chlorinated species are to be detected, then two ions from the isotopic envelope can be monitored, and confirmation of the target compound can be based not only on the gc retention time and the mass, but on the ratio of the two ion abundances being close to the theoretically expected value. The spectrometer cycles through the ions in the shortest possible time. This avoids compromising the chromatographic resolution of the gc, because even after extraction the sample contains many compounds in addition to the analyte. To increase sensitivity, some methods use sample concentration techniques. 

Analytical Approaches. Different analytical techniques have been appHed to each fraction to determine its molecular composition. As the molecular weight increases, complexity increasingly shifts the level of analytical detail from quantification of most individual species in the naphtha to average molecular descriptions in the vacuum residuum. For the naphtha, classical techniques allow the isolation and identification of individual compounds by physical properties. Gas chromatographic (gc) resolution allows almost every compound having less than eight carbon atoms to be measured separately. The combination of gc with mass spectrometry (gc/ms) can be used for quantitation purposes when compounds are not well-resolved by gc. 

Spectrometric Analysis. Remarkable developments ia mass spectrometry (ms) and nuclear magnetic resonance methods (nmr), eg, secondary ion mass spectrometry (sims), plasma desorption (pd), thermospray (tsp), two or three dimensional nmr, high resolution nmr of soHds, give useful stmcture analysis information (131). Because nmr analysis of or N-labeled amino acids enables determiaation of amino acids without isolation from organic samples, and without destroyiag the sample, amino acid metaboHsm can be dynamically analy2ed (132). Proteia metaboHsm and biosynthesis of many important metaboUtes have been studied by this method. Preparative methods for labeled compounds have been reviewed (133). 

Mass spectral analysis of quaternary ammonium compounds can be achieved by fast-atom bombardment (fab) ms (189,190). This technique rehes on bombarding a solution of the molecule, usually in glycerol [56-81-5] or y -nitroben2yl alcohol [619-25-0], with argon and detecting the parent cation plus a proton (MH ). A more recent technique has been reported (191), in which information on the stmcture of the quaternary compounds is obtained indirectly through cluster-ion formation detected via Hquid secondary ion mass spectrometry (Isims) experiments. 

Other methods of sensitive detection of radiotracers have been developed more recently. Eourier transform nmr can be used to detect (nuclear spin 1/2), which has an efficiency of detection - 20% greater than that of H. This technique is useful for ascertaining the position and distribution of tritium in the labeled compound (14). Eield-desorption mass spectrometry (fdms) and other mass spectral techniques can be appHed to detection of nanogram quantities of radiolabeled tracers, and are weU suited for determining the specific activity of these compounds (15). 

Liquid Ghromatography/Mass Spectrometry. Increased use of Hquid chromatography/mass spectrometry (Ic/ms) for stmctural identification and trace analysis has become apparent. Thermospray Ic/ms has been used to identify by-products in phenyl isocyanate precolumn derivatization reactions (74). Five compounds resulting from the reaction of phenyUsocyanate and the reaction medium were identified two from a reaction between phenyl isocyanate and methanol, two from the reaction between phenyl isocyanate and water, and one from the polymerisation of phenyl isocyanate. There were also two reports of derivatisation to enhance either the response or stmctural information from thermospray Ic/ms for linoleic acid hpoxygenase metabohtes (75) and for cortisol (76). 

The analysis of penicillins by mass spectrometry (qv) has developed with the advent of novel techniques such as fast atom bombardment. The use of soft ionization techniques has enabled the analysis of thermally labile nonvolatile compounds. These techniques have proven extremely valuable in providing abundant molecular weight information from underivatized penicillins, both as free acids and as metal salts (15). 

Infrared Spectrophotometry. The isotope effect on the vibrational spectmm of D2O makes infrared spectrophotometry the method of choice for deuterium analysis. It is as rapid as mass spectrometry, does not suffer from memory effects, and requites less expensive laboratory equipment. Measurement at either the O—H fundamental vibration at 2.94 p.m (O—H) or 3.82 p.m (O—D) can be used. This method is equally appticable to low concentrations of D2O in H2O, or the reverse (86,87). Absorption in the near infrared can also be used (88,89) and this procedure is particularly useful (see Infrared and raman spectroscopy Spectroscopy). The D/H ratio in the nonexchangeable positions in organic compounds can be determined by a combination of exchange and spectrophotometric methods (90). 

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