Deoxyribonucleic acid detection

T. Uno, T. Ohtake, H. Tabata, and T. Kawai, Direct deoxyribonucleic acid detection using ion-sensitive field-effect transistors. Jpn. J. Appl. Phys. 43, L1584—L1587 (2004). 

Norden, B.,Tjerneld, F., Binding of inert metal complexes to deoxyribonucleic acid detected by linear dichroism, FEBS Lett. 1976, 67, 368-370. 

Nucleic acid (deoxyribonucleic acid (DNA) and ribonucleic acid (RNA)) probes utilize labeled, ie, radioactive, enzymatic, or fluorescent, fragments of DNA or RNA (the probe) to detect complimentary DNA or RNA sequences in a sample. Because the probe is tailored for one specific nucleic acid, these assays are highly specific and very sensitive (45). 

Lu, L.J.W., Tasake, F., Hokanson, J.A. and Kohda, K. (1991). Detection of 8-hydroxy-2 -deoxyguanosine in deoxyribonucleic acid by the P-postlabelling method. Chem. Pharm. Bull. 39, 1880-1882. 

Graham D., Smith W.E., Linacre A.M.T., Munro C.H., Watson N.D., White P.C., Selective detection of deoxyribonucleic acid at ultralow concentrations by SERRS, Anal. Chem. 1997 69 4703-4707. 

Values found for the molecular weight of deoxyribonucleic acids also vary considerably, but probably lie between 1.0 X 106 and 4.4 X 106. Various difficulties encountered in making such measurements have been discussed by Jordan,244 and it is probable that more reliable information will be obtained only when the behavior of polyelectrolytes in general is better understood. Certain of the techniques used are useful in detecting differences between different nucleic-acid preparations, but the discrepancies between the values given by different methods of measurement appear to vary with the degree of polymerization.246... 

Latt, S.A. (1973). Microfluorometric detection of deoxyribonucleic acid replication in human metaphase chromosomes. Proc. Nat. Acad. Sci. U.S.A. 770 3395-3399. 

Chan CP, Tzang LC, Sin K et al (2007) Biofunctional organic nanocrystals for quantitative detection of pathogen deoxyribonucleic acid. Anal Chim Acta 584 7-11... 

Genotoxic effects have been reported in animals treated with 3,3 -dichlorobenzidine. A single dose of 3,3 -dichlorobenzidine (1,000 mg/kg) administered to male and pregnant female mice induced micronuclei in polychromatic erythrocytes in the bone marrow of the males and in the liver of the fetuses, but not in bone marrow of the dams (Cihak and Vontorkova 1987). A micronucleus test is performed to detect a chemical s ability to induce chromosomal aberrations. However, the relevance of micronuclei formation to human health is not known. The reason for the lack of effect of 3,3 -dichlorobenzidine on bone marrow micronuclei formation in the mothers is unclear, but it may be related to deficiencies in the metabolic activation of 3,3 -dichlorobenzidine in female mice. The relative importance of pregnancy is unknown since the study did not evaluate nonpregnant females. In another study, an increase in unscheduled deoxyribonucleic acid synthesis (UDS) was observed in cultured liver cells from male mice previously pretreated orally with single doses of 500 mg/kg 3,3 -dichlorobenzidine no response was observed at a dose of 200 mg/kg (Ashby and Mohammed 1988). 

The most important pyrimidine derivatives are those upon which biological organisms depend. Cytosine 1018 and uracil 1019 are found in ribonucleic acid (RNA) in the form of their ribonucleotides, cytidine 1020 and uridine 1021, while in deoxyribonucleic acid (DNA), cytosine and thymine 1022 are found in the form of their 2 -deoxyribonucleotides, 2 -deoxycytidine 1023 and thymidine 1024. 5-Methylcytosine 1025 is also found to a small extent (c. 5%) in human DNA in the form of its 2 -deoxyriboside 1026, and 5-(hydroxymethyl)cytosine-2 -deoxyriboside 1027 has also been detected in smaller amounts <2005CBI1>. Many variants of cytosine and uracil can be found in RNA including orotic acid 1028 in the form of its ribonucleotide orotidine 1029. Other pyrimidine derivatives to have been isolated from various biological sources include 2 -deoxyuridine 1030, alloxan 1031, and toxopyrimidine (pyramine) 1032 (Figure 2). 

Wood et al. (1991) have used the Southern hybridization method for detecting DNA amplification and a possible structural rearrangement of the HER-2/nen oncogene in 1 of 12 bladder tumors. Amplification of this oncogene in the tumor was sixfold that of oncogene found in placental DNA. Approximately 36% of the tumors studied overexpressed HER-2 mRNA, which was 3- to 38-fold that of normal urothelium. HER-2 overexpression occurred in superficial and invasive tumors. Deoxyribonucleic acid amplification occurs infrequently in bladder carcinoma, in contrast to its occurrence in some other carcinomas. Immunohistochemical analysis has shown that pi85 HER-2 polyclonal antibody is specific for HER-2 protein overexpression in bladder carcinoma. This study was carried out prior to the use of Herceptin. 

Blot overlays include the probing of membrane with various molecules to detect the presence of specific binding domains, for example, with guanine triphosphate (25,26) or proteoglycans (27). In the Southern or North Western blotting, the membrane is probed with deoxyribonucleic acid or ribonucleic acid molecules to detect nucleic-acid binding proteins (28). 

Immunocapture-polymerase chain reaction (IC-PCR) is a synthesis of two commonly used diagnostic tools. This method exploits the high-affinity binding of antibodies to provide a facile method of purification, usually from a complex matrix, supplying the substrate for PCR detection. PCR exponentially amplifies a deoxyribonucleic acid (DNA) template in a temperature-dependent fashion by the annealing of oligonucleotide primers, enzymatic extension of bound primers by a heat-stable polymerase, followed by denaturation of... 

Limbic system detect a gene mutation. The method uses the coupling of two adjacent synthetic oligonucleotides aligned on the template of the target deoxyribonucleic acid (DNA). Area of the brain associated with small, involuntary functions, emotions and behaviour. Comprises the hypothalamus, parahippocampus, olfactory lobe, dentate gyrus, amygdala, anterior thalamus, fornix and stria terminalis. 

W13. Wold, R. T., Young, F. E., Tan, E. M., andFarr, R. S., Deoxyribonucleic acid antibody A method to detect its primary interaction with deoxyribonucleic acid. Science 161, 806-807 (1968). 

Microsomal reduction of chromium(VI) can also result in the formation of chromium(V), which involves a one-electron transfer from the microsomal electron-transport cytochrome P450 system in rats. The chromium(V) complexes are characterized as labile and reactive. These chromium(V) intermediates persist for 1 hour in vitro, making them likely to interact with deoxyribonucleic acid (DNA), which may eventually lead to cancer (Jennette 1982). Because chromium(V) complexes are labile and reactive, detection of chromium(V) after in vivo exposure to chromium(VI) was difficult in the past. More recently, Liu et al. (1994) have demonstrated that chromium(V) is formed in vivo by using low-frequency electron paramagnetic resonance (EPR) spectroscopy on whole mice. In mice injected with sodium dichromate(VI) intravenously into the tail vein, maximum levels of chromium(V) were detected within 10 minutes and declined slowly with a life time of about 37 minutes. The time to reach peak in vivo levels of chromium(V) decreased in a linear manner as the administered dose levels of sodium... 

The infected system was shown to contain deoxymidine 5-phosphate this observation is interesting, since this nucleotide has not yet been shown to be present in normal cells. The nucleotide is presumably used for the synthesis of thymidine 5-triphosphoric acid. Detectable quantities of 5-(hydroxymethyl)cytosine or of 5-(hydroxymethyl)cytosine nucleotides were not present, despite the fact that this base is a normal constituent of the phage deoxyribonucleic acid. Explanations for this observation are that (a) the amount present in the acid-soluble fraction at any given moment is too small for detection by the methods of anal3rsis employed, or (b) the newly synthesized 5-(hydroxymethyl)cytosine is directly incorporated into deoxyribonucleic acid. 

Graham D, Smith WE, Linacre AMT, Muirro CH, Watson ND, White PC (1997) Selective detection of deoxyribonucleic acid at ultra low concentrations by SERRS. Anal Chem 69(22) 4703 707... 

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