Bacterial receptor protein

Our initial parametrization of the LIE equation was subsequently used for HIV protease and trypsin inhibitors as well as in a study of sugar binding to a bacterial receptor protein. While it was at first suspected that a... 

One paradigm for membrane transport of iron is the binding of the receptor protein to an iron-free siderophore molecule, followed by exchange of iron from an external ferri-siderophore to the receptor bound iron-free siderophore, and subsequent transfer across the cellular membrane. This shuttle mechanism has been explored in the transport system of ferric pyoverdine in P. aeruginosa (215,216). It is unclear why the bacterial system behaves in this manner, but mutagenesis studies of the protein suggest that residues involved in the closure of the P-barrel will not interact in the same way with the iron-free siderophore as they do with the ferri-siderophore. A similar mechanism has been suggested for A hydrophila and E. coli (182). 

All steps of the Ras pathway from ligand binding to receptor tyrosine kinases, down to activation of effectors like Raf kinase, occur at the plasma membrane. However, most biophysical studies on protein/protein interactions involved in this scenario have been carried out with bacterially synthesized proteins lacking... 

The precise chemical interactions between an adhesin and its receptor are also important. For example, direct- and water-mediated hydrogen bonds are the most important interactions within the carbohydrate-recognition domain in carbohydrate-binding adhesins on the host cell surface (Weis and Drickamer, 1996). Nonpolar van der Waals interactions and hydrophobic "stacking of the receptor oligosaccharide rings with aromatic amino acid side chains of the bacterial adhesin protein also contribute to oligosaccharide-protein interactions. X-ray structural... 

FIGURE 12-26 The two-component signaling mechanism in bacterial chemotaxis. When an attractant ligand (A) binds to the receptor domain of the membrane-bound receptor, a protein His kinase in the cytosolic domain (component 1) is activated and autophosphorylates on a His residue. This phosphoryl group is then transferred to an Asp residue on component 2 (in some cases a separate protein in others, another domain of the receptor protein). After phosphorylation on Asp, component 2 moves to the base of the flagellum, where it determines the direction of rotation of the flagellar motor. 

Although most exported bacterial proteins use this pathway, some follow an alternative pathway that uses signal recognition and receptor proteins homologous to components of the eukaryotic SRP and SRP receptor (Fig. 27-33). 

A major application of monoclonal antibodies is in clinical assays for drugs, bacterial and viral products, tumor antigens, hormones, and other circulating proteins. Their use in conjunction with immunoassays (Box 31-C) has provided increased specificity and sensitivity. Another major application is to observe binding of antibodies to specific proteins by electron microscopy. The location of specific receptor proteins can be established - as can the locations of ribosomal proteins and many other cellular components (Fig. 29-1). Monoclonal antibodies to acetylcholine receptors have been shown to induce symptoms of myasthenia gravis (Box 31-D), supporting the autoimmune origin of that disease. 1 Monoclonal antibodies specific for such a small hapten as mercuric ion have been isolated.k... 

Transport and Cell Penetration. One of the causes of bacterial resistance to the cephalosporins is poor transport of the antibiotic through tlie outer membrane of gram-negative bacteria. This lipid-bilayer membrane carries receptor proteins for the recognition and transport of essential nutrients, but provides an effective barrier to large molecules. In the case of the cephalosporins there can be a considerable difference between the concentration required to inhibit intact cells and the concentrations required to saturate the target enzymes in broken cell piepaiations. 

Nord K, Gunneriusson E, Ringdahi J, Stahl S, Uhlen M, Nygren P, Binding proteins selected from combinatorial libraries of an (a-helical bacterial receptor domain, Nat. Biotechnol., 15 772-777, 1997. 

Nord, K., Gunneriusson, E., Ringdahl, J., Stahl, S., Uhlen, M., and Nygeren, P. A. (1997). Binding protein selected from combinatorial libraries of an alpha-helical bacterial receptor domain. Nature Biotech. 15(8), 72-77. 

A remarkable feature of transferrin structure, discovered when the human lactoferrin structure was determined (67, 85), is the striking similarity with a group of bacterial binding proteins. These proteins, the bacterial periplasmic binding proteins, bind and transport certain small molecules, such as sugars, amino acids and oxyanions, through the periplasmic space before delivering them via specific receptors in the bacterial cell wall (111). They thus share with transferrins the... 

First, bacterial adhesion (usually gram-positive cocci and filamentous bacteria) occurs primarily through a Ca + complex formation between carboxyl (COO ) and phosphate (HPOs ) groups of bacterial surface and acquired pelhcle, although van der Waals forces and repulsive electrostatic forces are also present. Some specific bacterial surface proteins also serve as adhesins for specific receptors on acquired peUicle. Pellicle-integrated immunoglobulins also bind bacteria specifically. 

Relatively few membrane transport proteins have been structurally characterized. Some of the best understood examples to date are the lactose permease and glycerol-3-phosphate transporter and the Ca + P-type ATPase (which is a primary ion pump). Other structurally well-characterized transport proteins include the bacterial porins and siderophore receptor proteins. In addition structures have been determined for several ion channels and additional bacterial transporters that are either directly relevant to or models for proteins important in drug transport. The following web sites maintained by Hartmut Michel and Stephen White respectively, contain exceptionally useful listings of these and other solved membrane protein structures and are frequently updated ... 

---