Amino acid side chains aromatic

Similar ligand-ligand interactions have been reported for a large number of ternary -amino acid complexes, built up of two different amino acid.s. A compilation of 72 examples is presented in reference 39. The extra stabilisation due to ligand-ligand interactions in these complexes depends on the character of the amino-acid side chains and amounts to 0.34 - 0.57 kJ/mole for combinations of aromatic and aliphatic side chains and 0.11 - 6.3 kJ/mole when arene - arene interactions are possible. ... 

FIGURE 2.6 The procarcinogen benzo[a]pyrene oriented in the CYPlAl active site (stereo view) via n- n stacking between aromatic rings on the substrate and those of the complementary amino acid side chains, such that 7,8-epoxidation can occur. The substrate is shown with pale lines in the upper structures. The position of metabolism is indicated by an arrow in the lower structure (after Lewis 1996). 

The precise chemical interactions between an adhesin and its receptor are also important. For example, direct- and water-mediated hydrogen bonds are the most important interactions within the carbohydrate-recognition domain in carbohydrate-binding adhesins on the host cell surface (Weis and Drickamer, 1996). Nonpolar van der Waals interactions and hydrophobic "stacking of the receptor oligosaccharide rings with aromatic amino acid side chains of the bacterial adhesin protein also contribute to oligosaccharide-protein interactions. X-ray structural... 

The chiral distinction capability of cinchonan carbamate CSPs for underivatized amino acids has not been fully elucidated yet, in contrast to the large embodiment of A-acylated and A-arylated amino acid derivatives vide infra). However, it seems that chiral amino acids can be successfully resolved into enantiomers if the amino acid side chain R residue) contains a functionality that represents a strongly interactive binding site with the selector such as an extended aromatic ring system like in thyroxin (T4). 

Early methods of synthesis were riddled with problems such as racemization, poor percentage yield, long reaction times, and degradation of aromatic amino acid side chains. ° ... 

Helical heptad repeat sequences have been reported to be well behaved although they are difficult to characterize by NMR spectroscopy due to spectral overlap. The motifs that have been shown to have native-like properties, and are not highly repetitive, have cores composed of aromatic amino acid side chains of, for example, phenylalanine and tryptophan. In four-helix bundle motifs [1, 2], the /1/la-motif BBAl [5] and the /1-sheet protein Betanova [9], the formation of the folded structure appears to be strongly dependent on such residues although the energetics have not been calculated by substitution studies. As a tentative rule, therefore, the probability of success in the design of a new protein is probably much higher if residues are included that can form aromatic clusters in the core (Fig. 5). 

The twist of an a helix ensures that critical interactions occur between an amino acid side chain and the side chain three (and sometimes four) residues away on either side of it (Fig. 4-5). Positively charged amino acids are often found three residues away from negatively charged amino acids, permitting the formation of an ion pair. Two aromatic amino acid residues are often similarly spaced, resulting in a hydrophobic interaction. 

Does intercalation of flat molecules into nucleic acid chains have a biochemical function Aromatic rings of amino acid side chains in proteins designed to interact with... 

Table B3.5.2 Transitions of Aromatic Amino Acid Side Chains ...

Oxidation modifications such as carbonylation, thiol oxidation, and aromatic hydroxylation, and Maillard glycation (the reaction of sugars with amino acid side chains) are the protein modifications most frequently reported in foodstuffs that have been subjected to thermal processing. However, condensations and eliminations of side chains or peptide backbone breakdown have also been described (95). 

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