Cofactors metal/organic

Prosthetic groups and cofactors, whether organic or metallic, may be removed from a protein to create an inactive apo protein or enzyme. Loss of these groups may occur through environmental changes, such as removing metal ions from solution or adding denaturants to unfold... 

Enzymes may not function well or at all unless some other species known as a cofactor is present. An enzyme alone is referred to as the apoenzyme and the combination of enzyme and cofactor is known as the holoenzyme. Among the species that function as cofactors are organic compounds that interact with the enzyme. If the organic moiety is strongly attached to the enzyme, it is called a prosthetic group, but if it is loosely bound to the enzyme, it is referred to as a coenzyme. For the purposes of this discussion, the most interesting cofactors are metal ions. Depending on the type of enzyme, the appropriate metal ion cofactor may be Mg2+, Ca2+, K+, Fe2+, or Cu2+. A sizeable number of enzymes are sometimes called metalloenzymes because they have active sites that contain a metal. 

Synthesis of metal-organic cofactors Molybdopterin-cofactor in dehydrogenases FeMo-cofactor for nitrogenase... 

Covalent insertion of metal-organic cofactors Cytochrome c heme-ligase... 

There are two types of cofactors metal ions and small organic molecules. The latter of the two are also called coenzymes. The relationship be-... 

Nature has a variety of cofactors that it uses as reagents. Cofactors are organic compounds (or metal ions) that are bound within the active sites of enzymes and become reagents for various transformations that the 20 natural amino acids cannot catalyze on their own. It is... 

Another characteristic of enzymes is their frequent need for cofactors. A cofactor is a nonproteia compound that combines with the otherwise iaactive enzyme to give the active enzyme. Examples of cofactors are metal ions such as Ca ", Cu ", Co ", Fe ", and and organic molecules such as... 

Many enzymes carry out their catalytic function relying solely on their protein structure. Many others require nonprotein components, called cofactors (Table 14.2). Cofactors may be metal ions or organic molecules referred to as coenzymes. Cofactors, because they are structurally less complex than proteins, tend to be stable to heat (incubation in a boiling water bath). Typically, proteins are denatured under such conditions. Many coenzymes are vitamins or contain vitamins as part of their structure. Usually coenzymes are actively involved in the catalytic reaction of the enzyme, often serving as intermediate carriers of functional groups in the conversion of substrates to products. In most cases, a coenzyme is firmly associated with its enzyme, perhaps even by covalent bonds, and it is difficult to... 

Some enzymes require cofactors to activate catalysis. Typical cofactors are metal atoms, ammonia, and small organic molecules that associate with the enzyme and help to structure the catalytic site. To conduct an enz5anatic reaction, the necessary cofactors must be suppUed along with the substrate and the enzyme. In cell metabolism, a variety of these cofactors act in conjunction with inhibitors to control the metabolic rate. 

The aldehyde oxidoreductase from Desulfovibrio gigas shows 52% sequence identity with xanthine oxidase (199, 212) and is, so far, the single representative of the xanthine oxidase family. The 3D structure of MOP was analyzed at 1.8 A resolution in several states oxidized, reduced, desulfo and sulfo forms, and alcohol-bound (200), which has allowed more precise definition of the metal coordination site and contributed to the understanding of its role in catalysis. The overall structure, composed of a single polypeptide of 907 amino acid residues, is organized into four domains two N-terminus smaller domains, which bind the two types of [2Fe-2S] centers and two much larger domains, which harbor the molybdopterin cofactor, deeply buried in the molecule (Fig. 10). The pterin cofactor is present as a cytosine dinucleotide (MCD) and is 15 A away from the molecular surface,... 

Copper is an essential trace element. It is required in the diet because it is the metal cofactor for a variety of enzymes (see Table 50—5). Copper accepts and donates electrons and is involved in reactions involving dismu-tation, hydroxylation, and oxygenation. However, excess copper can cause problems because it can oxidize proteins and hpids, bind to nucleic acids, and enhance the production of free radicals. It is thus important to have mechanisms that will maintain the amount of copper in the body within normal hmits. The body of the normal adult contains about 100 mg of copper, located mostly in bone, liver, kidney, and muscle. The daily intake of copper is about 2—A mg, with about 50% being absorbed in the stomach and upper small intestine and the remainder excreted in the feces. Copper is carried to the liver bound to albumin, taken up by liver cells, and part of it is excreted in the bile. Copper also leaves the liver attached to ceruloplasmin, which is synthesized in that organ. 

Dioxygenases often have broad substrate specificity and require only a minimal characteristic structure for substrate recognition [310], Transition metal or an organic cofactor mediates dioxygen activation needed by the oxygenases action. Iron and copper, in their lower oxidation states are the metals most commonly used, but also organic co-factors like dihydroflavin and tetrahydropterin are able to activate the oxygen molecule. 

In the first family, the metal is coordinated by one molecule of the pterin cofactor, while in the second, it is coordinated to two pterin molecules (both in the guanine dinucleotide form, with the two dinucleotides extending from the active site in opposite directions). Some enzymes also contain FejSj clusters (one or more), which do not seem to be directly linked to the Mo centers. The molybdenum hydroxylases invariably possess redox-active sites in addition to the molybdenum center and are found with two basic types of polypeptide architecture. The enzymes metabolizing quinoline-related compounds, and derivatives of nicotinic acid form a separate groups, in which each of the redox active centers are found in separate subunits. Those enzymes possessing flavin subunits are organized as a2jS2A2, with a pair of 2Fe-2S centers in the (3 subunit, the flavin in the (3 subunit, and the molybdenum in the y subunit. 

The above account of selectivity of inorganic plus organic chemistry in synthesis is given rather extensively to stress three points. All the four (Mg, Fe, Co and Ni) porphyrin products came from one source, the synthesis of uroporphyrin. The basis of selection is very different from that in primitive centres which use thermodynamic stability constant selectivity based on different donor atoms for different metal ions. Here, all ion complexes have the same donor atoms, nitrogen, the most constrained being the coordination of Mg2+ by five nitrogens exactly as is seen for Fe in haemoglobin. Hence, there also has to be a new control feedback to ensure that the appropriate quantities of each metal cofactor is produced in a balanced way, that is synthesis from uroporphyrin has to be divided based upon... 

Frequently, metal ions are associated with the prosthetic group or cofactor. Heme rings usually contain a chelated iron atom. Occasionally, however, these metals are merely bound within folded polypeptide regions with no additional organic constituents required. Many metal ions are known to participate in enzymatic activity. One or more of the ions of Na, K, Ca, Zn, Cu, Mg, Mn, as well as Co and Mo are often required by enzymes to maintain activity. 

Metal ion-catalyzed hydrolytic processes have been studied for a long time, and many interesting systems have been explored which give valuable information about catalysis. However, with very few exceptions the catalysis afforded by these systems in water is disappointing when compared with enzymatic systems where a metal ion cofactor activates a substrate and a nucleophilic or basic group in an acyl or phos-phoryl transfer process. It has been noted that bulk water may not be a good medium to approximate the medium inside the active site of an enzyme where it is now known that the effective dielectric constants resemble those of organic solvents rather than water. 

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