Catalytic functionalities

There are reports of an increasing number of palladium-assisted reactions, in some of which the palladium has a catalytic function. Thus furan and thiophene undergo facile palladium-assisted alkenylation giving 2-substituted products. Benzo[6 Jfuran and TV- acetyl-indole yield cyclization products, dibenzofurans and carbazoles respectively, in addition to alkenylated products (8UOC851). The arylation of pyrroles can be effected by treatment with palladium acetate and an arene (Scheme 86) (81CC254). 

Yet another distinction is between intermolecular catalysis, in which the catalytic function and the reaction site are on different molecules, and intramolecular catalysis, in which the catalytic function and the reaction site are within the same molecule. All of the above examples constitute intermolecular catalyses. The following reaction, the hydrolysis of a monomaleate ester, is an intramolecular nucleophilic catalysis. 

As with intermolecular catalysis, the form of the rate equation may not decisively indicate the meehanism of the catalysis because of kinetic equivalences. Consider a substrate containing the acyl function -COX and an ionizable catalytic function -YH. 

Many enzymes carry out their catalytic function relying solely on their protein structure. Many others require nonprotein components, called cofactors (Table 14.2). Cofactors may be metal ions or organic molecules referred to as coenzymes. Cofactors, because they are structurally less complex than proteins, tend to be stable to heat (incubation in a boiling water bath). Typically, proteins are denatured under such conditions. Many coenzymes are vitamins or contain vitamins as part of their structure. Usually coenzymes are actively involved in the catalytic reaction of the enzyme, often serving as intermediate carriers of functional groups in the conversion of substrates to products. In most cases, a coenzyme is firmly associated with its enzyme, perhaps even by covalent bonds, and it is difficult to... 

Watson, J. D., ed., 1987. Evolution of catalytic function. Cold Spring Harbor Symposium on Quantitative Biology 52 1- 955. Publications from a symposium on tlie nature and evolution of catalytic biomolecules (proteins and RNA) prompted by tlie discovery that RNA could act catalytically. 

Uncovering of the three dimentional structure of catalytic groups at the active site of an enzyme allows to theorize the catalytic mechanism, and the theory accelerates the designing of model systems. Examples of such enzymes are zinc ion containing carboxypeptidase A 1-5) and carbonic anhydrase6-11. There are many other zinc enzymes with a variety of catalytic functions. For example, alcohol dehydrogenase is also a zinc enzyme and the subject of intensive model studies. However, the topics of this review will be confined to the model studies of the former hydrolytic metallo-enzymes. 

Catalytic functions of metal ions and their complexes. E. I. Ochiai, Coord. Chem. Rev., 1968, 3, 49-89(130). 

Esser, V., Britton, C.H., Weiss, B.C., Foster, D.W. McGarry, J.D. (1993). Cloning, sequencing and expression of a cDNA encoding rat liver carnitine palmitoyltransferase 1. Direct evidence that a single polypeptide is involved in inhibitor interaction and catalytic function. J. Biol. Chem. 268, 5817-5822. 

Esterases have a catalytic function and mechanism similar to those of lipases, but some structural aspects and the nature of substrates differ [4]. One can expect that the lessons learned from the directed evolution of lipases also apply to esterases. However, few efforts have been made in the directed evolution of enantioselective esterases, although previous work by Arnold had shown that the activity of esterases as catalysts in the hydrolysis of achiral esters can be enhanced [49]. An example regarding enantioselectivity involves the hydrolytic kinetic resolution of racemic esters catalyzed by Pseudomonasfluorescens esterase (PFE) [50]. Using a mutator strain and by screening very small libraries, low improvement in enantioselectivity was... 

Apart from their catalytic function, at least one form of glutathione-5-trans-ferases has the function of simply binding xenobiotics and transporting them, without metabolism. In effect, this is an example of storage (see Section 2.3.3). The form in question is termed ligandin, and binding is associated with one particular subunit. Binding is not associated with catalytic activity. 

However, in subsequent work it was found that carboxylic acid groups readily add to ketene acetals to form carboxyortho ester linkages (24). These are very labile linkages and on hydrolysis regenerate the carboxylic acid group which then exerts its catalytic function. Because carboxylic acids add so readily to ketene acetals, very labile polymers can be prepared by the addition of diacids to diketene acetals. The utilization of such polymers is currently under investigation. 

The active species are generated after refluxing the pristine CNT in HNO3 [137, 138]. Other oxidation strategies can be implemented for tuning the type and density of the oxidized catalytic functions. Resasco [139] pointed out that these results open up an avenue for tuning the density and distribution of C=0 pairs, in particular with controlled chirahties. 

Proteins may be classified on the basis of the solubility, shape, or function or of the presence of a prosthetic group such as heme. Proteins perform complex physical and catalytic functions by positioning specific chemical groups in a precise three-dimensional arrangement that is both functionally efficient and physically strong. 

The chapter on the mechanisms of action of enzymes has been revised to provide a comprehensive description of the various physical mechanisms by which enzymes carry out their catalytic functions. 

Control of catalytic functions using reaction fields... 

Figure 4. Alignment of PelZ and PelC amino acid sequences. The vertical lines indicate identical amino acids and the two points indicate homologous amino acids. The bold letters correspond to the residues probably involved in Ca + binding or catalytic function(s). The two aspartate residues probably involved in Ca binding are indicated with an asterisk. The invariant residues, probably involved in PGA cleavage, are indicated with an open circle. The folding in p-sheets is characterised by the underlined amino acids. Double underlining of PelZ residues is deduced from Chou Fasman and Robson Gamier folding predictions.

---