Catalysis using enzymes

The large size of the pores of MCM-41 has also allowed the entrapment of enzymes, such as cytochrome c, papain and trypsin [193]. Enzyme entrapment has been extensively performed with sol-gel materials. The types of applications of redox catalysis using enzyme-mesoporous materials is expected to parallel the sol-gel materials, which is discussed in the last section of this chapter. 

In the previous section, we dealt with homogeneous enzymatic catalysis using enzyme solutions. Enzymes can be used in another way by immobilizing them on membranes. Substrate and product species are adsorbed at the adsorption sites, which are formed by the bound enzyme molecules. The kinetic study is then completely identical to that of kinetics with heterogeneous catalysis and is... 

Enzyme CAS Registry Number Enzyme commission number Catalysis Use... 

In this chapter we shall illustrate some fundamental aspects of enzyme catalysis using as an example the serine proteinases, a group of enzymes that hydrolyze peptide bonds in proteins. We also examine how the transition state is stabilized in this particular case. 

Thomas, P.G., Russel, A.J., Fersht, A. Tailoring the pH dependence of enzyme catalysis using protein engineering. Nature 318 375-376, 1985. 

Enhanced thermal stability enlarges the areas of application of protein films. In particular it might be possible to improve the yield of reactors in biotechnological processes based on enzymatic catalysis, by increasing the temperature of the reaction and using enzymes deposited by the LB technique. Nevertheless, a major technical difficulty is that enzyme films must be deposited on suitable supports, such as small spheres, in order to increase the number of enzyme molecules involved in the process, thus providing a better performance of the reactor. An increased surface-to-volume ratio in the case of spheres will increase the number of enzyme molecules in a fixed reactor volume. Moreover, since the major part of known enzymatic reactions is carried out in liquid phase, protein molecules must be attached chemically to the sphere surface in order to prevent their detachment during operation. 

Enzymes are generally classified into six groups. Table 1 shows typical polymers produced with catalysis by respective enzymes. The target macromolecules for the enzymatic polymerization have been polysaccharides, poly(amino acid)s, polyesters, polycarbonates, phenolic polymers, poly(aniline)s, vinyl polymers, etc. In the standpoint of potential industrial applications, this chapter deals with recent topics on enzymatic synthesis of polyesters and phenolic polymers by using enzymes as catalyst. 

The same reasoning applies to the synthesis of pure enantiomers as to organic synthesis in general processes should be atom efficient and have low E factors, i.e. involve catalytic methodologies. This is reflected in the increasing attention being focused on enantioselective catalysis, using either enzymes or chiral metal complexes. 

Motivations for exploring enzymes in fuel cell catalysis are both intellectual and applied. Using enzymes as electrocatalysts, there is scope for creation of fuel cells... 

The differences in the rate constant for the water reaction and the catalyzed reactions reside in the mole fraction of substrate present as near attack conformers (NACs).171 These results and knowledge of the importance of transition-state stabilization in other cases support a proposal that enzymes utilize both NAC and transition-state stabilization in the mix required for the most efficient catalysis. Using a combined QM/MM Monte Carlo/free-energy perturbation (MC/FEP) method, 82%, 57%, and 1% of chorismate conformers were found to be NAC structures (NACs) in water, methanol, and the gas phase, respectively.172 The fact that the reaction occurred faster in water than in methanol was attributed to greater stabilization of the TS in water by specific interactions with first-shell solvent molecules. The Claisen rearrangements of chorismate in water and at the active site of E. coli chorismate mutase have been compared.173 It follows that the efficiency of formation of NAC (7.8 kcal/mol) at the active site provides approximately 90% of the kinetic advantage of the enzymatic reaction as compared with the water reaction. 

The importance of hydrophobic binding interactions in facilitating catalysis in enzyme reactions is well known. The impact of this phenomenon in the action of synthetic polymer catalysts for reactions such as described above is significant. A full investigation of a variety of monomeric and polymeric catalysts with nucleophilic sites is currently underway. They are being used to study the effect of polymer structure and morphology on catalytic activity in transacylation and other reactions. 

Another alternative is for the enzyme to actually form a covalent bond between the enzyme and the substrate. This direct, covalent participation of the enzyme in the chemical reaction is termed covalent catalysis. The enzyme uses one of its functional groups to react with the substrate. This enzyme-substrate bond must form fast, and the intermediates must be reasonably reactive if this kind of catalysis is going to give a rate acceleration. 

To date, most theozymes have been used to quantitate the effects of noncovalent interactions on catalysis by enzymes and catalytic antibodies (abzy-mes).131 Theozymes have provided insight into the... 

Abstract In the first part of this mini review a variety of efficient asymmetric catalysis using heterobime-tallic complexes is discussed. Since these complexes function at the same time as both a Lewis acid and a Bronsted base, similar to enzymes, they make possible many catalytic asymmetric reactions such as nitroal-dol, aldol, Michael, Michael-aldol, hydrophosphonyla-tion, hydrophosphination, protonation, epoxide opening, Diels-Alder and epoxi-dation reaction of a, 3-unsaturated ketones. In the second part catalytic asymmetric reactions such as cya-nosilylations of aldehydes... 

An enzyme is a protein that speeds up a biochemical reaction without itself experiencing any overall change. In chemical language, such a compound is called a catalyst and is said to catalyze a reaction. Chemists employ a variety of compounds as laboratory catalysts, and many industrial chemical processes would be impracticably slow without catalysis. An automobile s catalytic converter makes use of a metal catalyst to accelerate conversion of toxic carbon monoxide in the exhaust to carbon dioxide. Similarly, our bodies biochemical machinery effects thousands of different reactions that would not proceed without enzymatic catalysis. Some enzymes are exquisitely specific, catalyzing only one particular reaction of a single compound. Many others have much less exacting requirements and consequently exhibit broader effects. Specific or nonspecific, enzymes can make reactions go many millions of times faster than they would without catalysis. 

A second use of this type of analysis has been presented by Stewart and Benkovic (1995). They showed that the observed rate accelerations for some 60 antibody-catalysed processes can be predicted from the ratio of equilibrium binding constants to the catalytic antibodies for the reaction substrate, Km, and for the TSA used to raise the antibody, Kt. In particular, this approach supports a rationalization of product selectivity shown by many antibody catalysts for disfavoured reactions (Section 6) and predictions of the extent of rate accelerations that may be ultimately achieved by abzymes. They also used the analysis to highlight some differences between mechanism of catalysis by enzymes and abzymes (Stewart and Benkovic, 1995). It is interesting to note that the data plotted (Fig. 17) show a high degree of scatter with a correlation coefficient for the linear fit of only 0.6 and with a slope of 0.46, very different from the theoretical slope of unity. Perhaps of greatest significance are the... 

Hence the dimension ("the order") of the reaction is different, even in the simplest case, and hence a comparison of the two rate constants has little meaning. Comparisons of rates are meaningful only if the catalysts follow the same mechanism and if the product formation can be expressed by the same rate equation. In this instance we can talk about rate enhancements of catalysts relative to another. If an uncatalysed reaction and a catalysed one occur simultaneously in a system we may determine what part of the product is made via the catalytic route and what part isn t. In enzyme catalysis and enzyme mimics one often compares the k, of the uncatalysed reaction with k2 of the catalysed reaction if the mechanisms of the two reactions are the same this may be a useful comparison. A practical yardstick of catalyst performance in industry is the space-time-yield mentioned above, that is to say the yield of kg of product per reactor volume per unit of time (e.g. kg product/m3.h), assuming that other factors such as catalyst costs, including recycling, and work-up costs remain the same. 

Lewis-acid catalysis of Diels-Alder reactions involving bidentate dienophiles in water is possible also if the beneficial effect of water on the catalyzed reaction is reduced relative to pure water. There are no additional effects on endo-exo selectivity. As expected, catalysis by Cu ions is much more efficient than specific-acid catalysis.Using a-amino acids as chiral ligands, Lewis-acid enan-tioselectivity is enhanced in water compared to organic solvents. Micelles, in the absence of Lewis acids, are poor catalysts, but combining Lewis-acid catalysis and micellar catalysis leads to a rate accelaration that is enzyme-like. 

Proton transfers are particularly common. This acid-base catalysis by enzymes is much more effective than the exchange of protons between acids and bases in solution. In many cases, chemical groups are temporarily bound covalently to the amino acid residues of the enzyme or to coenzymes during the catalytic cycle. This effect is referred to as covalent catalysis (see the transaminases, for example p. 178). The principles of enzyme catalysis sketched out here are discussed in greater detail on p. 100 using the example of lactate dehydrogenase. 

In what is now a classical study in enzyme kinetics, W. J. Albery and J. R Knowles developed a strategy for establishing a reaction coordinate diagram (shown in Fig. 2) for triose-phosphate isomerase catalysis using solvent exchange and kinetic isotope effect data. 

As mentioned in part 2.1.3 hydrolytic enzymes are the most frequently used enzymes in organic chemistry. There are several reasons for this. Firstly, they are easy to ttse because they do not need cofactors like the oxidoreductases. Secondly, there are a large amormt of hydrolytic enzymes available because of their industrial interest. For instance detergent enzymes comprise proteases, celltrlases, amylases and lipases. Even if hydrolytic enzymes catalyse a chemically simple reaction, many important featirres of catalysis are still contained such as chemo-, regio- and stereoselectivity and specificity. 

Stereoselective catalysis using biocatalysts (e.g. enzymes) and also of rationally designed small chiral molecules, deals essentially with the same principle the spatial and selective docking of guest molecules to a chiral host molecule to form complementary interactions to form reversible transient molecule associates (see the specific sections in this volume). The enantiomeric excess of a certain reaction and hence the result will be determined by the degree of chiral discrimination. Along the same theoretical lines the concepts of protein (enzyme, antibody, etc.) mimicks via imprinted" synthetic polymers should be mentioned and will be discussed further. 

Lipase has been used in organic solvents to produce useful compounds. For example, Zark and Klibanov (8) reported wide applications of enzymes to esterification in preparing optically active alcohols and acids. Inada et al (9) synthesized polyethylene glycol-modified lipase, which was soluble in organic solvent and active for ester formation. These data reveal that lipases are very useful enzymes for the catalysis different types of reactions with rather wide substrate specificities. In this study, it was found that moditied lipase could also synthesize esters and various lipids in organic solvents. Chemically moditied lipases can help to solve today s problems in esteritication and hopefully make broader use of enzymatic reactions that are attractive to the industry. 

Bioreactions. The use of supercritical fluids, and in particular C02, as a reaction media for enzymatic catalysis is growing. High diffusivities, low surface tensions, solubility control, low toxicity, and minimal problems with solvent residues all make SCFs attractive. In addition, other advantages for using enzymes in SCFs instead of water include reactions where water is a product, which can be driven to completion increased solubilities of hydrophobic materials increased biomolecular thermostability and the potential to integrate both the reaction and separation bioprocesses into one step (98). There have been a number of biocatalysis reactions in SCFs reported (99—101). The use of lipases shows perhaps the most commercial promise, but there are a number of issues remaining unresolved, such as solvent—enzyme interactions and the influence of the reaction environment. A potential area for increased research is the synthesis of monodisperse biopolymers in supercritical fluids (102). 

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