Urease other

Urease solution. Place about 5 g. of jack-bean meal in a mortar and grind up with about 10 ml. of water, t hen add about 90 ml. of water, mix thoroughly and allow to stand for some time in order to deposit starch and other insoluble substances. Decant off the supernatant liquid into a conical flask and cork the latter. 

Recently, the old alkaline phenol method has been revived, and is being widely used in clinical laboratories, without protein preclpltatlon(27). In this procedure, the serum is added to an alkaline phenol reagent, and the ammonia generated from urea is determined either after the action of urease or after strong alkaline treatment of the serum. The objection to this procedure is first, that all urease is rich in ammonia, and second, the color produced with alkaline phenol is not specific for ammonia. It will react with other compounds, especially for those that liberate ammonia. By this procedure one obtains a useful number from the point of view of determining whether the patient has nitrogen retention, but a value which is somewhere between a urea and an N.P.N. determination. 

For other, larger proteins, the release was very slow - in 100 hours no more than 5% of loaded catalyse, urease, glucose oxidase or hemoglobin were released. 

Figure 15.4(A) shows the effect of the R = Zn2+/Al3+ ratio, which determines the charge density of the LDH layer, on the Freundlich adsorption isotherms. K values are far higher than those measured for smectite or other inorganic matrices. The increase in Kf with the charge density (Kf= 215, 228, 325mg/g, respectively, for R = 4, 3 and 2) is supported by a mechanism of adsorption based on an anion exchange reaction. The desorption isotherms confirm that urease is chemically adsorbed by the LDH surface. The aggregation of the LDH platelets can affect noticeably their adsorption capacity for enzymes and the preparation of LDH adsorbant appears to be a determinant step for the immobilization efficiency. [ZnRAl]-urease hybrid LDH was also prepared by coprecipitation with R = 2, 3 and 4 and Q= urease/ZnRAl from 1 /3 up to 2.5. For Q < 1.0,100 % of the urease is retained by the LDH matrix whatever the R value while for higher Q values an increase in the enzyme/LDH weight ratio leads to a decrease in the percentage of the immobilized amount.

Several enzymes have been immobilized in sol-gel matrices effectively and employed in diverse applications. Urease, catalase, and adenylic acid deaminase were first encapsulated in sol-gel matrices [72], The encapsulated urease and catalase retained partial activity but adenylic acid deaminase completely lost its activity. After three decades considerable attention has been paid again towards the bioencapsulation using sol-gel glasses. Braun et al. [73] successfully encapsulated alkaline phosphatase in silica gel, which retained its activity up to 2 months (30% of initial) with improved thermal stability. Further Shtelzer et al. [58] sequestered trypsin within a binary sol-gel-derived composite using TEOS and PEG. Ellerby et al. [74] entrapped other proteins such as cytochrome c and Mb in TEOS sol-gel. Later several proteins such as Mb [8], hemoglobin (Hb) [56], cyt c [55, 75], bacteriorhodopsin (bR) [76], lactate oxidase [77], alkaline phosphatase (AP) [78], GOD [51], HRP [79], urease [80], superoxide dismutase [8], tyrosinase [81], acetylcholinesterase [82], etc. have been immobilized into different sol-gel matrices. Hitherto some reports have described the various aspects of sol-gel entrapped biomolecules such as conformation [50, 60], dynamics [12, 83], accessibility [46], reaction kinetics [50, 54], activity [7, 84], and stability [1, 80],... 

Kinetic evidence obtained for intramolecular proton transfer between nickel and coordinated thiolate, in a tetrahedral complex containing the bulky triphos ligand (Pl PCE CE PPh to prevent interference from binuclear p-thiolate species, is important with respect to the mechanisms of action of a number of metalloenzymes, of nickel (cf. urease, Section VII. B.4) and of other metals (289). 

Given that hydroxylamine reacts rapidly with heme proteins and other oxidants to produce NO [53], the hydrolysis of hydroxyurea to hydroxylamine also provides an alternative mechanism of NO formation from hydroxyurea, potentially compatible with the observed clinical increases in NO metabolites during hydroxyurea therapy. Incubation of hydroxyurea with human blood in the presence of urease results in the formation of HbNO [122]. This reaction also produces metHb and the NO metabolites nitrite and nitrate and time course studies show that the HbNO forms quickly and reaches a peak after 15 min [122]. Consistent with earlier reports, the incubation ofhy-droxyurea (10 mM) and blood in the absence of urease or with heat-denatured urease fails to produce HbNO over 2 h and suggests that HbNO formation occurs through the reactions of hemoglobin and hydroxylamine, formed by the urease-mediated hydrolysis of hydroxyurea [122]. Significantly, these results confirm that the kinetics of HbNO formation from the direct reactions of hydroxyurea with any blood component occur too slowly to account for the observed in vivo increase in HbNO and focus future work on the hydrolytic metabolism of hydroxyurea. 

The second source of biochemicals is molecules excreted from cells such as extracellular enzymes and other organic matter. A typical example is cellulase, which is excreted by fungi such as Penicillium in order to break down wood and woody material into sugars that can be used by the organisms. Other common extracellular enzymes found in soil are ureases and amylases. Often enzymes are associated with clay particles, and in such associations, their activity may be increased, decreased, unchanged, or completely destroyed [15],... 

Because urease activities are much greater in the soil than in the floodwater, the NH4+ is largely formed in the soil as the urea moves downward by mass flow and diffusion. The NH4+, H+ and other reactants will also move between the floodwater and soil-both upward and downward-with NH3 being lost from the floodwater by volatilization. The recovery of N in the crop therefore depends on the rate of movement of urea and its reaction products through the soil and on the rate at which the roots remove N from the downward moving pool. 

The high specificity of siderophore iron coordination has been extensively explored in iron-chelation therapy for various medical applications, including iron overload diseases, control of iron in specific brain tissues , arresting the growth and proliferation of malaria parasite within their host , as well as arresting the proliferation of cancer cells . Other directions for metal ligation involve enzyme inhibition, which have been demonstrated by the inhibition of urease by coordination of hydroxamate ligand to nickel ions and zinc coordination in matrix metalloprotease (MMP) inhibition by primary hydroxamates. ... 

The sensing microzone of the flow-through sensor depicted in Fig. 5.9.B1 integrates gas-diffusion and detection with two analytical reactions [28], viz. (a) the urease-catalysed formation of ammonium ion by hydrolysis of urea (the analyte), which takes places on a hydrophilic enzyme membrane in contact with the sample-donor stream, which contains a gel where the enzyme is covalently bound and (b) an acid-b reaction that takes place at the microzone on the other side of the diffusion membrane and involves Bromothymol Blue as indicator. This is a sandwich-type sensor including a hydrophilic and a hydrophobic membrane across which the sample stream is circulated —whence it is formally similar to some enzyme electrodes. Since the enzymatic conversion of the analyte must be as efficient as possible, deteetion (based on fibre optics) is performed after the donor and acceptor streams have passed through the sensor. Unlike the previous sensor (Fig. 5.9.A), this does not rely on the wall-jet approach in addition, each stream has its own outlet and the system includes two sensing microzones... 

Acids likewise inhibit the formation of trimethylsilyl derivatives, and thus the acid in hydrolyzates must be carefully neutralized. In cases where deproteinization is necessary, acidic conditions should be avoided.137,138 High concentrations of urea, as in urine samples, also interfere with the trimethylsilylation reaction, and should be eliminated by treatment with urease,138 although some authors have reported successful results without use of this step,118 Various reagents other than hexamethyldisilazane and chlorotri-methylsilane have been recommended for trimethylsilylation. These differ in their effectiveness as trimethylsilylating agents, their stability to water, or both. 

The isolation and crystallization of urease by James Sumner in 1926 provided a breakthrough in early enzyme studies. Sumner found that urease crystals consisted entirely of protein, and he postulated that all enzymes are proteins. In the absence of other examples, this idea remained controversial for some time. Only in the 1930s was Sumner s conclusion widely accepted, after John Northrop and Moses Kunitz crystallized pepsin, trypsin, and other digestive enzymes and found them also to be proteins. During this period,... 

Many enzymes have been named by adding the suffix -ase to the name of their substrate or to a word or phrase describing their activity. Thus urease catalyzes hydrolysis of urea, and DNA polymerase catalyzes the polymerization of nucleotides to form DNA. Other enzymes were named by their discovers for a broad func-... 

In 1926, James Summer crystallized the enzyme urease (Chapter 16) and crystallization of other enzymes soon followed.380 In 1934, J. B. 

Enzymes are usually impressively specific in their action. The specificity toward substrate is sometimes almost absolute. For many years urea was believed to be the only substrate for the enzyme urease and succinate the only substrate for succinate dehydrogenase. Even after much searching for other substrates, only... 

Figure 16-25 The active site of urease showing the two Ni+ ions held by histidine side chains and bridged by a carbamylated lysine (K217 ). Abound urea molecule is shown in green. It has been placed in an open coordination position on one nickel and is shown being attacked for hydrolytic cleavage by a hydroxyl group bound to the other nickel. Based on a structure by Jabri et al.i36 and drawing by Lippard.437...

The nickel in urease is nonmagnetic and appears to be in the oxidation state Ni(II). The broad optical absorption spectrum is influenced by ligands to the metal (Fig. 1). The spectrum obtained in the presence of the competitive inhibitor mercaptoethanol, after correction for Rayleigh scattering by the protein (31), shows absorption peaks at 324,380, and 420 nm, with molar absorption coefficients of 1550,890, and 460 A/-1 cm-1, respectively. These were assigned to sulfur-to-nickel charge transfer transitions. The spectrum is changed by addition of other inhibitors, such as acetohydroxamic acid (Fig. IB). Similar... 

Dixon et al. (35) have proposed a mechanism for urease catalysis (Fig. 3) based on studies of the reactions with the poor substrates formamide, acetamide, and iV-methylurea. They suggest that the two nickel ions are both in the active site, one binding urea and the other a hydroxide ion which acts as an efficient nucleophile. This implies that the nickel ions are within 0.6 nm (1 nm = 10 A) of each other so far it... 

In contrast to urease the nickel in other bacterial enzymes appears to have a redox function and to take up oxidation states Ni(I) and/or Ni(III). Fortunately these states have recently become better understood in inorganic systems (see the preceding review in this volume by... 

The four types of nickel-containing enzymes are quite distinct in the coordination sites and catalytic function of the nickel centers. In urease, the nickel appears to be bound to oxygen and nitrogen ligands and appears to remain as Ni(II), a state which favors octahedral or square-planar coordination. The function of nickel in this unique case may be analogous to that of zinc in other hydrolases such as carboxypeptidase. 

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