Solvation, by water

It IS not possible to tell by inspection whether the a or p pyranose form of a par ticular carbohydrate predominates at equilibrium As just described the p pyranose form IS the major species present m an aqueous solution of d glucose whereas the a pyranose form predominates m a solution of d mannose (Problem 25 8) The relative abundance of a and p pyranose forms m solution depends on two factors The first is solvation of the anomeric hydroxyl group An equatorial OH is less crowded and better solvated by water than an axial one This effect stabilizes the p pyranose form m aqueous solution The other factor called the anomeric effect, involves an electronic interaction between the nng oxygen and the anomeric substituent and preferentially stabilizes the axial OH of the a pyranose form Because the two effects operate m different directions but are com parable m magnitude m aqueous solution the a pyranose form is more abundant for some carbohydrates and the p pyranose form for others... 

Protein tertiary structure is also influenced by the environment In water a globu lar protein usually adopts a shape that places its hydrophobic groups toward the interior with Its polar groups on the surface where they are solvated by water molecules About 65% of the mass of most cells is water and the proteins present m cells are said to be m their native state—the tertiary structure m which they express their biological activ ity When the tertiary structure of a protein is disrupted by adding substances that cause the protein chain to unfold the protein becomes denatured and loses most if not all of Its activity Evidence that supports the view that the tertiary structure is dictated by the primary structure includes experiments m which proteins are denatured and allowed to stand whereupon they are observed to spontaneously readopt their native state confer matron with full recovery of biological activity... 

The effect of alkyl substitution on alcohol acidity is due primarily to solvation of the alkoxide ion that results from dissociation. The more readily the alkoxide ion is solvated by water, the more stable it is, the more its formation is energetically favored, and the greater the acidity of the parent alcohol. For example, the oxygen atom of an unhindered alkoxide ion, such as that from methanol, is stericallv accessible and is easily solvated by water. The oxygen... 

What about tertiary structure Why does any protein adopt the shape it does The forces that determine the tertiary structure of a protein are the same forces that act on ail molecules, regardless of size, to provide maximum stability. Particularly important are the hydrophilic (water-loving Section 2.13) interactions of the polar side chains on acidic or basic amino acids. Those acidic or basic amino acids with charged side chains tend to congregate on the exterior of the protein, where they can be solvated by water. Those amino acids with neutral, nonpolar side chains tend to congregate on the hydrocarbon-like interior of a protein molecule, away from the aqueous medium. 

Micelle (Section 27.2) A spherical cluster of soaplike molecules that aggregate in aqueous solution. The ionic heads of the molecules lie on the outside, where they are solvated by water, and the organic tails bunch together on the inside of the micelle. 

Proteins do not exist as isolated entities in the gas phase. They are always solvated by water molecules or embedded in membranes. Trying to obtain a... 

In almost all theoretical studies of AGf , it is postulated or tacitly understood that when an ion is transferred across the 0/W interface, it strips off solvated molecules completely, and hence the crystal ionic radius is usually employed for the calculation of AGfr°. Although Abraham and Liszi [17], in considering the transfer between mutually saturated solvents, were aware of the effects of hydration of ions in organic solvents in which water is quite soluble (e.g., 1-octanol, 1-pentanol, and methylisobutyl ketone), they concluded that in solvents such as NB andl,2-DCE, the solubility of water is rather small and most ions in the water-saturated solvent exist as unhydrated entities. However, even a water-immiscible organic solvent such as NB dissolves a considerable amount of water (e.g., ca. 170mM H2O in NB). In such a medium, hydrophilic ions such as Li, Na, Ca, Ba, CH, and Br are selectively solvated by water. This phenomenon has become apparent since at least 1968 by solvent extraction studies with the Karl-Fischer method [35 5]. Rais et al. [35] and Iwachido and coworkers [36-39] determined hydration numbers, i.e., the number of coextracted water molecules, for alkali and alkaline earth metal... 

The active site of enzymes usually are located in clefts and crevices in the protein. This design effectively excludes bulk solvent (water), which would otherwise reduce the catalytic activity of the enzyme. In other words, the substrate molecule is desolvated upon binding, and shielded from bulk solvent in the enzyme active site. Solvation by water is replaced by specific interactions with the protein (Warshel et al., 1989). 

Remarkable data on primary hydration shells are obtained in non-aqueous solvents containing a definite amount of water. Thus, nitrobenzene saturated with water contains about 0.2 m H20. Because of much higher dipole moment of water than of nitrobenzene, the ions will be preferentially solvated by water. Under these conditions the following values of hydration numbers were obtained Li+ 6.5, H+ 5.5, Ag+ 4.4, Na+ 3.9, K+ 1.5, Tl+ 1.0, Rb+ 0.8, Cs+0.5, tetraethylammonium ion 0.0, CIO4 0.4, NO3 1.4 and tetraphenylborate anion 0.0 (assumption). 

What is the origin of the energy difference between the polyproline II and /J-strand backbone conformations Brant and Flory (1965b) emphasize the important roles of steric clash, dipole-dipole interactions (see also Avbelj and Moult, 1995), and the torsional potentials governing rotation about the backbone ,t/i angles (see also Flory, 1969). An ab initio quantum mechanics study (Han et al., 1998 see also references therein to earlier work) finds that solvation by water is important. The authors examine the predicted stabilities of eight conformers of... 

Both the protein and the ligand are solvated by water when they are separated. As the two surfaces interact, water is excluded, hydrogen bonds are broken and formed, hydrophobic interactions occur, and the protein and ligand stick to each other. As in protein folding and for the same reasons, the hydrophobic interaction provides much of the free energy for the association reaction, but polar groups that are removed... 

Note Added in Proof After we sent the manuscript to the publishers we became aware of CNDO studies on alkali ion solvation performed by Gupta and Rao 270> and Balasubramanian et al.271 >, which might be of some importance for readers interested in cation solvation by water and various amides. Another CNDO model investigation on the structure of hydrated ions was published very recently by Cremaschi and Simonetta 272> They studied CH5 and CH5 surrounded by a first shell of water molecules in order to discuss solvation effects on structure and stability of these organic intermediates or transition states respectively. 

Usnally, only very dilute solutions can be considered ideal. In most aqueous solutions, ions are stabilized because they are solvated by water molecules. As the ionic strength is increased, ions interact with each other. Thus, when calculating the chemical potential of species i, a term that takes into account the deviation from ideal conditions is added. This term is called an excess term and can be either positive or negative. The term usually is written as 7 riny., where y. is the activity coefficient of component i. The complete expression for the chemical potential of species i then becomes... 

In this report we analyze the binding of hydrated Cu(ll) in pores of diameter in the range 0.7 to 5.8 nm, based on ESR spectra measured at X-band (9 GHz) and S-band (2.4 GHz), in the temperature range 77 K to 300 K. It will be shown that the results obtained in this study can best be rationalized in terms of cation solvation by water whose properties vary gradually, as a function of the distance from the polymer network. No evidence was observed for the presence of measurable amounts of bulk water in pores of diameter in the range studied. Some preliminary results have already been reported" 5. 

This value of d suggests that in the large pores, for example in pores with diameter of 5.8 nm, the cations are approximately at 2.0 nm from the network, not at 2.9 nm if only one cation per pore is measured. The presence of two cations per pore reduces even more the number of ions which are expected to be solvated by water removed from the polymer network. The result is that even though the pores increase in size, the distance between the cation and the network decreases. 

PKa = 4.4, in water), less than O2 that the potential of 0 2 /H02 becomes higher than that of 02/0 2 . As a consequence, the superoxide disproportionates into O2 and HO2 , in the presence of proton sources. An evaluation of the solvent effect on the redox potential of the 02/0 2 system is not easy because of the difficulty in comparing the potential scales in various media but, obviously, assuming that the junction potential between the aqueous SCE and every solvent does not exist is far from correct [12] adopting any extrathermodynamic hypothesis would be better. The important shift in the one-electron reduction of O2 to 0 2 , almost 0.5 V, has been attributed to the solvation of 0 2 , which is much more strongly solvated by water than by the aprotic media hexamethylphosphorotriamide (HMPT) is the solvent where the 2/0 2 potential is... 

In the mixtures of water with organic solvents of lower than water donicity such as water-methanol [56, 57] and water-ethanol [58], the rate constant of the Zn(II)/Zn(Hg) system changes nonmono-tonically with solvent composition and exhibits a minimum for such concentration of organic component in the mixture, at which the Zn(II) ions are solvated by water molecules but the electrode is already solvated by the organic solvent. The influence of the composition of such mixtures on the rate of the Zn(II)/Zn(Hg) electrode processes was described by the equation [56, 57, 59]... 

A similar linear relationship between Cu(II/I) potential values and logarithmic Cu" L stabiKty constants may exist in non-aqueous solvents, but such a relationship has not been adequately established. Measurements conducted in our laboratories on a variety of polythioether complexes have shown that the Cu"L stability constants tend to increase by approximately 10 on going from water to acetonitrile, whereas the Cu L stability constants tend to decrease by a similar order of magnitude [54]. These values obviously reflect the preference of Cu (I I) to be solvated by water and the corresponding preference of Cu(I) to be coordinated to acetonitrile [111]. 

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