Soft laser desorption

Mass spectrometry requires that the material being studied be converted into a vapor. Great strides have been taken in recent years to address this problem, especially in enticing large, thermally fragile (bio)molecules into the vapor state. Matrix assisted laser ionization-desorption (MALDI) and electrospray ionization (ESI) are two current forefront methods that accomplish this task. Even components of bacteria and intact viruses are being examined with these approaches. John B. Fenn and Koichi Tanaka shared in the award of a Nobel Prize in 2002 for their respective contributions to development of electrospray ionization and soft laser desorption. 

The year 2002 was an extraordinary year for liquid chromatography-mass spectrometry (LC/MS) practitioners. On October 9, 2002, the Royal Swedish Academy of Sciences annonnced their decision to award the Nobel Prize in Chemistry to John B. Fenn, Koichi Tanaka, and Kurt Wiithrich for their development of analytical methods for the identification and structnral analysis of biological macromolecnles. Fenn and Tanaka shared the prize for developing electrospray and soft-laser desorption, respectively. These soft-ionization techniqnes allow macromolecules to be ionized withont fragmentation. 

Introduction of ionization of protein molecules by soft laser desorption, which is basic theory for MALDI-TOF MS and SELDI-TOF MS 1995 Definition of proteomics was first coined... 

Koichi Tanaka presented experiments for soft laser desorption ionisation (SLD) of proteins in 1987. However, the predominant and most widely used version of SLD, matrix assisted laser desorption ionisation, MALDI, was introduced shortly afterwards by Michael Karas and Eranz Hillenkamp. Tanaka was awarded the Nobel Prize for his cornerstone invention in 2002. Prior to that, no method was available to transfer large biomolecules with molecular weights of more than... 

Soft ionization MS techniques [9] like electrospray ionization (ESI) and soft laser desorption, often known as matrix-assisted laser desorption/ioniza-tion (MALDI), facilitated the polymer analyses over the last years. The advantage of the soft ionization techniques is the transformation of dissolved liquid or solid sample into the gas phase, where no change in the molecular composition/structure of the sample will be induced, while hard ionization in mass spectrometry (e.g., electron ionization (El) or fast atom bombardment (FAB)) preferentially destroys the chemical and molecular structure into fragments prior to the detection of the molar mass fragments of the sample by mass spectrometry. 

Rousell DJ, Dutta SM, Little MW, Murray KK (2004) Matrix-free infrared soft laser desorption/ ionization. J Mass Spectrom 39 1182-1189... 

Photoselective ionization combined with mass spectrometry seemed from the outset to hold the greatest promise for the study and identification of complex organic molecules, especially biomolecules. This is due to the fact that two-photon ionization at moderate laser pulse powers causes no strong fragmentation of the molecules, whereas ionization by electron impact causes substantial fragmentation. This is evident from a comparison between the mass spectra presented in Figs. 10.4(a) and (d). Several ways have been found to achieve this goal by means of soft laser desorption of molecules from a surface, followed by their photoionization, specifically in a jet-cooled stream, and chemiionization in a dense cloud of desorbed (ablated) biomolecules. 

Most biochemical analyses by MS use either electrospray ionization (ESI) or matrix-assisted laser desorption ionization (MALD1), typically linked to a time-of-flight (TOF) mass analyzer. Both ESI and MALDl are "soft" ionization methods that produce charged molecules with little fragmentation, even with biological samples of very high molecular weight. 

Recent attention has focused on MS for the direct analysis of polymer extracts, using soft ionisation sources to provide enhanced molecular ion signals and less fragment ions, thereby facilitating spectral interpretation. The direct MS analysis of polymer extracts has been accomplished using fast atom bombardment (FAB) [97,98], laser desorption (LD) [97,99], field desorption (FD) [100] and chemical ionisation (Cl) [100]. 

Alternative approaches consist in heat extraction by means of thermal analysis, thermal volatilisation and (laser) desorption techniques, or pyrolysis. In most cases mass spectrometric detection modes are used. Early MS work has focused on thermal desorption of the additives from the bulk polymer, followed by electron impact ionisation (El) [98,100], Cl [100,107] and field ionisation (FI) [100]. These methods are limited in that the polymer additives must be both stable and volatile at the higher temperatures, which is not always the case since many additives are thermally labile. More recently, soft ionisation methods have been applied to the analysis of additives from bulk polymeric material. These ionisation methods include FAB [100] and LD [97,108], which may provide qualitative information with minimal sample pretreatment. A comparison with FAB [97] has shown that LD Fourier transform ion cyclotron resonance (LD-FTTCR) is superior for polymer additive identification by giving less molecular ion fragmentation. While PyGC-MS is a much-used tool for the analysis of rubber compounds (both for the characterisation of the polymer and additives), as shown in Section 2.2, its usefulness for the in situ in-polymer additive analysis is equally acknowledged. 

Although FD was one of the earliest forms of soft ionisation, poor sensitivity and limited applicability have restricted the impact of the approach in the mainstream of mass spectrometry. More recently, many of the application areas of FD and FI have been appropriated by FAB-MS, which is generally considered to be a technique that requires less expertise alternatively, laser desorption is frequently being applied. FD-MS is only used in a handful of laboratories worldwide. The technique has recently been reviewed [107], and is subject of various monographs [108,112],... 

It is therefore not surprising that the interest in PyMS as a typing tool diminished at the turn of the twenty-first century and hence why taxonomists have turned to MS-based methods that use soft ionization methods such as electrospray ionization (ESI-MS) and matrix-assisted laser desorption ionization (MALDI MS). These methods generate information-rich spectra of metabolites and proteins, and because the molecular ion is seen, the potential for biomarker discovery is being realized. The analyses of ESI-MS and MALDI-MS data will still need chemometric methods, and it is hoped that researchers in these areas can look back and learn from the many PyMS studies where machine learning was absolutely necessary to turn the complex pyrolysis MS data into knowledge of bacterial identities. 

Mass spectrometry is used to identify unknown compounds by means of their fragmentation pattern after electron impact. This pattern provides structural information. Mixtures of compounds must be separated by chromatography beforehand, e.g. gas chromatography/mass spectrometry (GC-MS) because fragments of different compounds may be superposed, thus making spectral interpretation complicated or impossible. To obtain complementary information about complex mixtures as a whole, it may be advantageous to have only one peak for each compound that corresponds to its molecular mass ([M]+). Even for thermally labile, nonvolatile compounds, this can be achieved by so-called soft desorption/ionisation techniques that evaporate and ionise the analytes without fragmentation, e.g. matrix-assisted laser desorption/ionisation mass spectrometry (MALDI-MS). 

Matrix-assisted laser desorption/ ionization MALDI Photon induced desorption/ ionization Nonvolatile molecular ions Soft method Large molecules... 

The development of soft ionization methods (electrospray ionization and matrix-assisted laser desorption ionization, and others not discussed here) has contributed to the remarkable progress seen in mass spectrometry applied to biochemistry and molecular biology research progress, and is beginning to find applications in archaeology. 

Several years later, the next step in the application of MS-MS for mixture analysis was developed by Hunt et al. [3-5] who described a master scheme for the direct analysis of organic compounds in environmental samples using soft chemical ionisation (Cl) to perform product, parent and neutral loss MS-MS experiments for identification [6,7]. The breakthrough in LC-MS was the development of soft ionisation techniques, e.g. desorption ionisation (continuous flow-fast atom bombardment (CF-FAB), secondary ion mass spectrometry (SIMS) or laser desorption (LD)), and nebulisation ionisation techniques such as thermospray ionisation (TSI), and atmospheric pressure ionisation (API) techniques such as atmospheric pressure chemical ionisation (APCI), and electrospray ionisation (ESI). 

Together with ESI MS, other soft ionization MS techniques, such as matrix-assisted laser desorption/ionization time of flight (MALDI TOF) and fast atom bombardment (FAB) MS, may be used for the determination of the stoichiometry of selector-selectand complexes. 

Mass spectrometry methods based on soft ionization techniques, 59,61,88,89 matrix-assisted laser desorption ionization/time-of-flight (MALDI-TOF), have been successfully applied for the direct analysis of grape and wine extracts and for monitoring flavonoid reactions in model solution studies. They give access to the molecular weights of the different species present in a fraction or extract and, through fragmentation patterns, provide important information on their constitutive units. Description of the various MS techniques can be found in Chapters 1 and 2. 

In 1974, Comarisov and Marshall60 developed Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS). This technique allows mass spectrometric measurements at ultrahigh mass resolution (R = 100000-1000000), which is higher than that of any other type of mass spectrometer and has the highest mass accuracy at attomole detection limits. FTICR-MS is applied today together with soft ionization techniques, such as nano ESI (electrospray ionization) or MALDI (matrix assisted laser/desorption ionization) sources. 

Two recently developed mass spectrometric techniques have had a major impact on the analysis of large biomolecules matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) and electrospray ionization mass spectrometry (ESI-MS). MALDI-MS was first introduced by Karas and Hillenkamp66 and Tanaka et al.61 in 1988 and has experienced an exponential development. It has become a widespread soft ionization technique for bioorganic samples, especially large biomolecules. Fenn and co-workers68 first published the successful soft ionization technique for... 

A schematic of the basic principles of a matrix-assisted laser desorption/ion source is shown in Figure 2.35. By the interaction of a focused laser beam with short pulses and a suitable matrix, the energy of the photons is transferred to the matrix molecules. In MALDI mostly pulsed UV (e.g., nitrogen, X = 337 nm, pulse duration 3-10 ns), but also IR lasers (e.g., Er YAG, X = 2.94 (xm or C02, X = 10.6(xm with a higher pulse duration of up to 600 ns) are used. The MALDI mass spectra obtained during soft ionization by UV and IR lasers are identical. The energy density... 

ToF mass spectrometers as dynamic instruments gained popularity with the introduction of matrix assisted laser desorption/ionization (MALDI) and electrospray ionization (ESI) as effective pulsed ion sources for the soft ionization of large biomolecules (up to 10s dalton) due to their high ion transmission.38 ToF mass spectrometers, quadrupole analyzers and/or magnetic sector fields can be combined in tandem mass spectrometers (MS/MS) for the analysis of organic compounds. 

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