Nucleotides extraction

Alamine/ Freon Nucleotide extraction Alamine/ Nucieo- Freon tide extraction Alamine/ Nucieo- Freon tide extraction ... 

Pyrimidine nucleotides, extracted with acid from the RNA remaining in P-5 -N-deficient RBCs, have an absorption peak at 270 nm. This pealc is quite distinct firom the peak at 257nm, which is because of purine nucleotides (such as ATP) that are normally present. WhehP-5 -N is deficient and RNA persists, the P-5 -N deficiency can be inferred by observing a pyrimidine nucleotide peak at 270nm in an acid extract of RBCs. 

Karl, D.M., Haugsness, J.A., Campbell, L. and Holm-Hansen, O., 1978. Adenine nucleotide extraction from multicellular organisms and beach sand ATP recovery, energy charge ratios and determination of carbon/ATP ratios. J. Exp. Mar. Biol. Ecol., 34 163—181. 

Grob, M.K., et al.. Optimization of cellular nucleotide extraction and sample preparation for nucleotide pool analyses using capillary electrophoresis, J Chromatogr B Aiudyt Technol Biomed Life Sci, 788, 103, 2003. 

Thirty minutes after intravenous administration of 5 jitCi of glycine, liver tissue was sampled. Adenine nucleotides extracted by acid were degraded to adenine and it was purified by silver nitrate precipitation and Dowex 50 column. The specific activity of adenine thus obtained served as the index of the rate of purine biosynthesis de novo. ... 

It has been recrystd from H2O (fine needles) and is freely soluble in boiling H2O. Crysts also from H2O by addition of acetone. Purified by chromatography on Dowex 1 (in formate form), eluting with 0.25M formic acid. It was then adsorbed onto charcoal (which had been boiled for 15min with M HCI, washed free of chloride and dried at 100°), and recovered by stirring three times with isoamyl alcohol/H20 (1 9 v/v). The aqueous layer from the combined extracts was evaporated to dryness under reduced pressure, and the product was crystallised twice from hot H2O. [Morrison and Doherty Biochem J19 433 7967]. It has A-max 259nm (e 15,400) in H2O at pH 7.0. [Alberty et al. J Biol Chem 193 425 7957 Martell and Schwarzenbach Heh Chim Acta 39 653 7956]. The acridinium salt has m 208° [Baddiley and Todd J Chem Soc 648 1947 Pettit Synthetic Nucleotides, van Nostrand-Reinhold, NY, Vol 1 252 1972 NMR Sarma et al. J Am Chem Soc 96 7337 1974 Norton et al. J Am Chem Soc 98 1007 1976 IR of diNa salt Miles Biochem Biophys Acta 27 324 1958],... 

By structural complementarity, dicationic l,4-diazabicyclo[2.2.2]octane (VII) provides an appropriate recognition site for phosphate ions and two stearyl side chains attached to the amines add lipophilic properties 59,60). Such a carrier model can selectively extract nucleotides from aqueous solution to chloroform solution via lipophilic salt formation. The order of nucleotide affinity is ATP > ADP > AMP. The selectivity ratios were 45 for ADP/AMP and 7500 for ATP/AMP at pH 3. The relative transport rate was ATP > ADP > AMP. The ratios were 60 for ATP/AMP and 51 for ADP/AMP. The modes of interaction of ADP and ATP are proposed to be as shown in Fig. 6. 

A cloned complementary DNA to a neurotoxin precursor RNA extracted from the venom glands of Laticauda semifasciata was isolated and its nucleotide sequence was identified 11). The cloning of neurotoxin should aid the understanding of structure—function relationship eventually. 

Polarographic studies are reported on thioesters, mainly of the type (140) and (141), and on trichloroethylphosphonites. In the field of nucleotides and nucleosides it is found that ATP has a very high surface activity at the mercury electrode, which is strongly dependent upon complex formation with transition metals. The polarographic behaviour of cobalt complexes with triphenylphosphine and its oxide has been studied in order to estimate extraction efficiencies. 

Substantial attention has been devoted to the metabolism of 5-fluorouracil and related compounds. For example, F NMR was used successfully both in cell extracts and in whole mycelia to elucidate anabolic reactions involving pyrimidine nucleotides and degradation to a-fluoro-p-alanine in the fungus Nectria haematococca (Parisot et al. 1989,1991). 

Depicted in Fig. 2, microemulsion-based liquid liquid extraction (LLE) of biomolecules consists of the contacting of a biomolecule-containing aqueous solution with a surfactant-containing lipophilic phase. Upon contact, some of the water and biomolecules will transfer to the organic phase, depending on the phase equilibrium position, resulting in a biphasic Winsor II system (w/o-ME phase in equilibrium with an excess aqueous phase). Besides serving as a means to solubilize biomolecules in w/o-MEs, LLE has been frequently used to isolate and separate amino acids, peptides and proteins [4, and references therein]. In addition, LLE has recently been employed to isolate vitamins, antibiotics, and nucleotides [6,19,40,77-79]. Industrially relevant applications of LLE are listed in Table 2 [14,15,20,80-90]. 

The Zn-N3imide interaction has been used to selectively extract imide-containing nucleosides and nucleotides into lipophilic media (39). Hexadecyl-derivatized Zn2+-cyclen was shown to extract dT from an aqueous solution containing a mixture of C, A, and G nucleobases. The antiviral agent AZT (3 azido-3 deoxythymidine) could also be extracted into CHCI3 from neutral aqueous solutions. Transport across a lipophilic layer was also shown, using acidic conditions, to promote the release of dT and AZT (Fig. 9). 

Seasonal variations in the metabolic fate of adenine nucleotides prelabelled with [8—1-4C] adenine were examined in leaf disks prepared at 1-month intervals, over the course of 1 year, from the shoots of tea plants (Camellia sinensis L. cv. Yabukita) which were growing under natural field conditions by Fujimori et al.33 Incorporation of radioactivity into nucleic acids and catabolites of purine nucleotides was found throughout the experimental period, but incorporation into theobromine and caffeine was found only in the young leaves harvested from April to June. Methy-lation of xanthosine, 7-methylxanthine, and theobromine was catalyzed by gel-filtered leaf extracts from young shoots (April to June), but the reactions could not be detected in extracts from leaves in which no synthesis of caffeine was observed in vivo. By contrast, the activity of 5-phosphoribosyl-1-pyrophosphate synthetase was still found in leaves harvested in July and August. 

Fig. 12. Absorption spectra of perchloric acid extracts of whole blood from normal subject and a patient with pyrimidine 5 -nucleotides (P5N) deficiency. Absorption peak shift occurs in P5N deficiency, reflecting intracellular accumulation of pyrimidine nucleotides.

Figure 6. The c-mos negative regulatory element (NRE). Nucleotide positions of the NRE are shown relative to the spermatocyte transcription start site, taken as 280 base pairs upstream of the c-mos ATG (see Fig. 4). The endpoints of the NRE are defined by deletions that allow c-mos expression in NIH 3T3 and other somatic cells. Mutations of the sequences designated by boxes 1,2, and 3 also allow c-mos transcription in NIH 3T3 cells, indicating that these sequences represent functional elements within the NRE. Boxes 1 and 2 are similar to sequences upstream of the protamine (Prot) promoter that inhibit in vitro transcription in HeLa cell extracts. A sequence just upstream of box 2 is also similar to a putative repressor-binding site in the regulatory region of Pgk2.

The in vitro transcribed RNAs are phenol-chloroform extracted, ethanol-precipitated, and washed once with 70% ethanol. The RNA pellet is resuspended in 30 1 H20 and loaded to DyeEx 2.0 spin columns (Qiagen) to remove free nucleotides the RNA is then quantified by spectrophotometry. Approximately 20 to 30 pg of RNA is obtained from one reaction. For the initial preparation of transcripts, we would examine the quality and quantity of synthesized RNA by separating them on 1% denaturing agarose gels with total cell RNA preparation as a size maker (28S and 18S ribosomal RNAs... 

The most convincing evidence in favor of a uniform 3,5-diester linkage between nucleotides has been obtained by the action of various enzymes on synthetic diesters of known constitution.218 217 Ribonuclease and spleen extracts were found to act only on nucleoside 3-(benzyl hydrogen phosphates), but not on other isomers, to give nucleoside cyclic phosphates which are broken down further to give nucleoside 3-phosphates. It is concluded, by analogy, that polynucleotides, which are substrates for these enzymes, also possess ester groupings at the 3-positions, rather than at the... 

Although dynein binding to MTs is not stabilized by AMP-PNP, both cytoplasmic dynein and kinesin associate with microtubules in nucleotide-depleted extracts and both are released by addition of ATP. Early studies with... 

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