Modelling partition coefficient

Table 5.2. Analysis using the pseudophase model partition coefficients for 5.2 over CTAB or SDS micelles and water and second-order rate constants for the Diels-Alder reaction of 5.If and 5.1g with 5.2 in CTAB and SDS micelles at 25 C.

The HYBOT descriptors were successfully applied to the prediction of the partition coefficient log P (>i--octanol/water) for small organic componnds with one acceptor group from their calculated polarizabilities and the free energy acceptor factor C, as well as properties like solubility log S, the permeability of drugs (Caco-2, human skin), and for the modeling of biological activities. 

Concerning the distribution of a drug, models have been published for log BB blood/brain partition coefficient) for CNS-active drugs (CNS, central nervous system) crossing the blood-brain barrier (BBB) [38-45] and binding to human serum albumin (HSA) [46]. 

Solubilisation is usually treated in terms of the pseudophase model, in which the bulk aqueous phase is regarded as one phase and tire micellar pseudophase as another. This allows the affinity of the solubilisate for the micelle to be quantified by a partition coefficient P. Different definitions of P can be found in the literature, differing in their description of the micellar phase. Frequently P is... 

The kinetic data are essentially always treated using the pseudophase model, regarding the micellar solution as consisting of two separate phases. The simplest case of micellar catalysis applies to unimolecTilar reactions where the catalytic effect depends on the efficiency of bindirg of the reactant to the micelle (quantified by the partition coefficient, P) and the rate constant of the reaction in the micellar pseudophase (k ) and in the aqueous phase (k ). Menger and Portnoy have developed a model, treating micelles as enzyme-like particles, that allows the evaluation of all three parameters from the dependence of the observed rate constant on the concentration of surfactant". ... 

The catalytic effect on unimolecular reactions can be attributed exclusively to the local medium effect. For more complicated bimolecular or higher-order reactions, the rate of the reaction is affected by an additional parameter the local concentration of the reacting species in or at the micelle. Also for higher-order reactions the pseudophase model is usually adopted (Figure 5.2). However, in these systems the dependence of the rate on the concentration of surfactant does not allow direct estimation of all of the rate constants and partition coefficients involved. Generally independent assessment of at least one of the partition coefficients is required before the other relevant parameters can be accessed. 

In contrast to SDS, CTAB and C12E7, CufDSjz micelles catalyse the Diels-Alder reaction between 1 and 2 with enzyme-like efficiency, leading to rate enhancements up to 1.8-10 compared to the reaction in acetonitrile. This results primarily from the essentially complete complexation off to the copper ions at the micellar surface. Comparison of the partition coefficients of 2 over the water phase and the micellar pseudophase, as derived from kinetic analysis using the pseudophase model, reveals a higher affinity of 2 for Cu(DS)2 than for SDS and CTAB. The inhibitory effect resulting from spatial separation of la-g and 2 is likely to be at least less pronoimced for Cu(DS)2 than for the other surfactants. 

Many additional consistency tests can be derived from phase equiUbrium constraints. From thermodynamics, the activity coefficient is known to be the fundamental basis of many properties and parameters of engineering interest. Therefore, data for such quantities as Henry s constant, octanol—water partition coefficient, aqueous solubiUty, and solubiUty of water in chemicals are related to solution activity coefficients and other properties through fundamental equiUbrium relationships (10,23,24). Accurate, consistent data should be expected to satisfy these and other thermodynamic requirements. Furthermore, equiUbrium models may permit a missing property value to be calculated from those values that are known (2). 

Once the composition of each equiHbrium phase is known, infinite dilution activity coefficients for a third component ia each phase can then be calculated. The octanol—water partition coefficient is directly proportional to the ratio of the infinite dilution activity coefficients for a third component distributed between the water-rich and octanol-rich phases (5,24). The primary drawback to the activity coefficient approach to estimation is the difficulty of the calculations involved, particularly when the activity coefficient model is complex. 

By modeling the substance behavior at the interface of two liquid phases, in particular, stationary and mobile phases in liquid chromatography, 1-octanol - water partition coefficients or partition coefficients in... 

Obviously, construction of a mathematical model of this process, with our present limited knowledge about some of the critical details of the process, requires good insight and many qualitative judgments to pose a solvable mathematical problem with some claim to realism. For example what dictates the point of phase separation does equilibrium or rate of diffusion govern the monomer partitioning between phase if it is the former what are the partition coefficients for each monomer which polymeric species go to each phase and so on. 

Barrett and Thomas (10)proposed that these effects of differential monomer adsorption could be modeled by correcting homogeneous solution copolymerization reactivity ratios with the monomer s partition coefficient between the particles and the diluent. The partition coefficient is measured by static equilibrium experiments. Barrett s suggested equations are ... 

The BUSES model provides an estimate of the organic carbon/water partition coefficient (Koc) based on the octanol/water partition coefficient (Kow)- From these data, it is evident that the methyltins are less likely to partition onto organic carbon (in sediments, soils, biota) than are the butyl- and octyltin compormds due to then-lower partition coefficients and higher water solubilities. The 7/oc value can then be used to derive sohds/water partition coefficients in suspended matter, in sediment, and in soil using values of 10%, 5%, and 2% for organie carbon, representing typical organic carbon contents of suspended matter, sediment, and soil, respeetively. 

As most organotins decompose, boiling points of 250 °C were assumed in the absence of a "true boiling point. The values for Henry s law constant and organic carbon/water partition coefficient were all derived from EUSES unless otherwise indicated. The chlorides were chosen as soluble salts in this table toxicity is independent of salt (see section 8), and soluble salts maximize likely environmental exposure, giving worst case in modelling environmental fate. 

Physiologically Based Phamiacokinetic (PBPK) Model—Comprised of a series of compartments representing organs or tissue groups with realistic weights and blood flows. These models require a variety of physiological information tissue volumes, blood flow rates to tissues, cardiac output, alveolar ventilation rates and, possibly membrane permeabilities. The models also utilize biochemical information such as air/blood partition coefficients, and metabolic parameters. PBPK models are also called biologically based tissue dosimetry models. 

Mathai and Singh have estimated the permeability coefficient P, using the formula P = kD where k is the partition coefficient and D is the diffusivity. They have used both parallel and series models to calculate P. The experimental values are always greater than measured values. The poor agreement between the experimental and calculated values is attributed to the polar-polar interaction between the epoxy group and nitrile group. 

Examples of models of the environmental fate of chemicals, utilizing partition coefficients and fngacities, are given in the works cited earlier, and also in Chapter 3 in Walker et al. (2000, 2006). 

Figure 5.3. A cellular automata model of the interface between two immiscible bquids, after the demixing process has reached an equilibrium. A solute (encircled cells) has partitioned into the two phases according to its partition coefficient...

Two macromolecular computational problems are considered (i) the atomistic modeling of bulk condensed polymer phases and their inherent non-vectorizability, and (ii) the determination of the partition coefficient of polymer chains between bulk solution and cylindrical pores. In connection with the atomistic modeling problem, an algorithm is introduced and discussed (Modified Superbox Algorithm) for the efficient determination of significantly interacting atom pairs in systems with spatially periodic boundaries of the shape of a general parallelepiped (triclinic systems). 

Squire [364] and Porath [300,301] developed geometrical pore models for gel chromatography media. Squire considered a gel with a set of conical, cylindrical, and rectangular crevices, and found the pore volume, assumed equal to the partition coefficient K y, to vary as... 

Partition coefficients for various gel models are given in Table 3. This table shows the dependence of on the assumed structure of the pores. The Ogston model, for example, gives... 

Johansson and coworkers [182-184] have analyzed polyacrylamide gel structure via several different approaches. They developed an analytical model of the gel structure using a single cylindrical unit cell coupled with a distribution of unit cells. They considered the distribution of unit cells to be of several types, including (1) Ogston distribution, (2) Gaussian distribution of chains, and (3) a fractal network of pores [182-184]. They [183] used the equilibrium partition coefficient... 

When a two- or higher-phase system is used with two or more phases permeable to the solute of interest and when interactions between the phases is possible, it would be necessary to apply the principle of local mass equilibrium [427] in order to derive a single effective diffusion coefficient that will be used in a one-equation model for the transport. Extensive justification of the principle of local thermdl equilibrium has been presented by Whitaker [425,432]. If the transport is in series rather than in parallel, assuming local equilibrium with equilibrium partition coefficients equal to unity, the effective diffusion coefficient is... 

It is interesting to note that Johansson andLofroth [183] found i to equal 1.09 for the diffusion analysis, but the partition coefficient followed a streched exponential with varying i from 1 to 2, indicating that the ratio of diffusion coefficient is not equal to the accessible volume fraction for large molecules, as is assumed in the ORMC model for gel electrophoresis. 

Despite the work of Overton and Meyer, it was to be many years before structure-activity relationships were explored further. In 1939 Ferguson [10] postulated that the toxic dose of a chemical is a constant fraction of its aqueous solubility hence toxicity should increase as aqueous solubility decreases. Because aqueous solubility and oil-water partition coefficient are inversely related, it follows that toxicity should increase with partition coefficient. Although this has been found to be true up to a point, it does not continue ad infinitum. Toxicity (and indeed, any biological response) generally increases initially with partition coefficient, but then tends to fall again. This can be explained simply as a reluctance of very hydrophobic chemicals to leave a lipid phase and enter the next aqueous biophase [11]. An example of this is shown by a QSAR that models toxicity of barbiturates to the mouse [12] ... 

Usually aquatic toxicity of chemicals with general narcosis mechanism of action is described by the octanol/water partition coefficient [73]. However, log is a composite descriptor which has components of molecular volume and H-bond acceptor terms. Raevsky and Dearden [74] therefore used molecular polarizabihty (as a volume-related term) and the H-bond acceptor factor instead of log to model aquatic toxicity (log LC50) to the guppy for 90 chemicals with general narcosis mechanisms. This excellent correlation has statistical criteria better than that obtained for the same data using log Pofy, ... 

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