Cell, eukaryotic

Every cell is separated from the outside world by a cell membrane, or plasma membrane, an assemblage of lipid molecules and proteins. In addition to the cell membrane and external to it, a prokaryotic bacterial cell has a cell wall, which is made up mostly of polysaccharide material, a feature it shares with eukaryotic plant cells. The chemical natures of prokaryotic and eukaryotic cell walls differ somewhat, but a common feature is that the polymerization of sugars produces the polysaccharides found in both. Because the cell wall is made up of rigid material, it presumably serves as protection for the cell. 

Prokaryotes have a nuclear region, which contains DNA, and ribosomes, the site of protein synthesis, as their main features. They have a cell membrane, but do not have an internal membrane system. 

Multicellular plants and animals are eukaryotes, as are protista and fungi, but obvious differences exist among them. These differences are reflected on the cellular level. One of the biggest differences between eukaryotes and prokaryotes is the presence of subcellular organelles. 

Three of the most important organelles in eukaryotic cells are the nucleus, the mitochondrion, and the chloroplast. Each is separated from the rest of the cell by a double membrane. The nucleus contains most of the DNA of the cell 

Chloroplasts, which are found in green plants and green algae, are the sites of photosynthesis. Both mitochondria and chloroplasts contain DNA that differs from that found in the nucleus, and both carry out transcription and protein synthesis distinct from that directed by the nucleus. 

Yeasts Yeast aggregation can be classified into three types based on different mechanisms [36]  

1) Cell-to-cell bonding due to interactions between a-agglutinins and a-agglutinins on the yeast cell wall during mating  

2) Chain formation caused by nonseparation of daughter cells from parent cells after budding  

Self-flocculation is an essential feature of the yeasts used in the brewing industry where yeast cells are separated from the broth at the end of fermentation. Since flocculating yeast can form floes with a suitable size range (1-4 mm) under designated hydrodynamic conditions, it has been considered promising for continuous 

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Although the compounds were isolated in quantities of only a few milligrams per kilogram of cmde plant leaves, extensive work on a variety of animal tumor systems led to eventual clinical use of these bases, first alone and later in conjunction with other materials, in the treatment of Hodgkin s disease and acute lymphoblastic leukemia. Their main effect appears to be binding tightly to tubuHn, the basic component of microtubules found in eukaryotic cells, thus interfering with its polymerization and hence the formation of microtubules required for tumor proliferation (82). 

Figure S.21 The hemaggiutinin moiecuie is formed from three subunits. Each of these subunits Is anchored In the membrane of the influenza vims. The globular heads contain the receptor sites that bind to sialic acid residues on the surface of eukaryotic cells. A major part of the subunit interface is formed by the three long intertwining helices, one from each subunit. (Adapted from I. Wilson et al.. Nature 289 366-373, 1981.)...

In comparison to prokaryotic cells, eukaryotic cells are much greater in size, typically having cell volumes 10 to 10 times larger. Also, they are much more complex. These two features require that eukaryotic cells partition their diverse... 

Mitochondria Mitochondria are organelles surrounded by two membranes that differ markedly in their protein and lipid composition. The inner membrane and its interior volume, the matrix, contain many important enzymes of energy metabolism. Mitochondria are about the size of bacteria, 1 fim. Cells contain hundreds of mitochondria, which collectively occupy about one-fifth of the cell volume. Mitochondria are the power plants of eukaryotic cells where carbohydrates, fats, and amino acids are oxidized to CO9 and H9O. The energy released is trapped as high-energy phosphate bonds in ATR... 

Without consulting chapter figures, sketch the characteristic prokaryotic and eukaryotic cell types and label their pertinent organelle and membrane systems. 

Airother interesting facet of lipid anchors is that they are transient. Lipid anchors can be reversibly attached to and detached from proteins. This provides a switching device for altering the affinity of a protein for the membrane. Reversible lipid anchoring is one factor in the control of signal transduction pathways in eukaryotic cells (Chapter 34). 

Glomset, J. A., Gelb, M. H., and Farnswordi, C. C., 1990. Prenyl proteins in eukaryotic cells A new type of membrane anchor. Trends in Biochemical Sciences 15 139—142. 

In contrast, RNA occurs in multiple copies and various forms (Table 11.2). Cells contain up to eight times as much RNA as DNA. RNA has a number of important biological functions, and on this basis, RNA molecules are categorized into several major types messenger RNA, ribosomal RNA, and transfer RNA. Eukaryotic cells contain an additional type, small nuclear RNA (snRNA). With these basic definitions in mind, let s now briefly consider the chemical and structural nature of DNA and the various RNAs. Chapter 12 elaborates on methods to determine the primary structure of nucleic acids by sequencing methods and discusses the secondary and tertiary structures of DNA and RNA. Part rV, Information Transfer, includes a detailed treatment of the dynamic role of nucleic acids in the molecular biology of the cell. 

FIGURE 11.24 The properties of mRNA molecules in prokaryotic versus eukaryotic cells during transcription and translation. 

The DNA in a eukaryotic cell nucleus during the interphase between cell divisions exists as a nucleoprotein complex called chromatin. The proteins of chromatin fall into two classes histones and nonhistone chromosomal proteins. 

The ability of dyneins to effect mechano-chemical coupling—i.e., motion coupled with a chemical reaction—is also vitally important inside eukaryotic cells, which, as already noted, contain microtubule networks as part of the cytoskele-ton. The mechanisms of intracellular, microtubule-based transport of organelles and vesicles were first elucidated in studies of axons, the long pro-... 

FIGURE 20.1 Pyruvate produced hi glycolysis is oxidized in the tricarboxylic acid (TCA) cycle. Electrons liberated in this oxidation flow through the electron transport chain and drive the synthesis of ATP in oxidative phosphorylation. In eukaryotic cells, this overall process occurs in mitochondria. 

The processes of electron transport and oxidative phosphorylation are membrane-associated. Bacteria are the simplest life form, and bacterial cells typically consist of a single cellular compartment surrounded by a plasma membrane and a more rigid cell wall. In such a system, the conversion of energy from NADH and [FADHg] to the energy of ATP via electron transport and oxidative phosphorylation is carried out at (and across) the plasma membrane. In eukaryotic cells, electron transport and oxidative phosphorylation are localized in mitochondria, which are also the sites of TCA cycle activity and (as we shall see in Chapter 24) fatty acid oxidation. Mammalian cells contain from 800 to 2500 mitochondria other types of cells may have as few as one or two or as many as half a million mitochondria. Human erythrocytes, whose purpose is simply to transport oxygen to tissues, contain no mitochondria at all. The typical mitochondrion is about 0.5 0.3 microns in diameter and from 0.5 micron to several microns long its overall shape is sensitive to metabolic conditions in the cell. 

Most of the NADH used in electron transport is produced in the mitochondrial matrix space, an appropriate site because NADH is oxidized by Complex I on the matrix side of the inner membrane. Furthermore, the inner mitochondrial membrane is impermeable to NADH. Recall, however, that NADH is produced in glycolysis by glyceraldehyde-3-P dehydrogenase in the cytosol. If this NADH were not oxidized to regenerate NAD, the glycolytic pathway would cease to function due to NAD limitation. Eukaryotic cells have a number of shuttle systems that harvest the electrons of cytosolic NADH for delivery to mitochondria without actually transporting NADH across the inner membrane (Figures 21.33 and 21.34). 

Several additional points should be made. First, although oxygen esters usually have lower group-transfer potentials than thiol esters, the O—acyl bonds in acylcarnitines have high group-transfer potentials, and the transesterification reactions mediated by the acyl transferases have equilibrium constants close to 1. Second, note that eukaryotic cells maintain separate pools of CoA in the mitochondria and in the cytosol. The cytosolic pool is utilized principally in fatty acid biosynthesis (Chapter 25), and the mitochondrial pool is important in the oxidation of fatty acids and pyruvate, as well as some amino acids. 

In the endoplasmic reticulum of eukaryotic cells, the oxidation of the terminal carbon of a normal fatty acid—a process termed ch-oxidation—can lead to the synthesis of small amounts of dicarboxylic acids (Figure 24.27). Cytochrome P-450, a monooxygenase enzyme that requires NADPH as a coenzyme and uses O, as a substrate, places a hydroxyl group at the terminal carbon. Subsequent oxidation to a carboxyl group produces a dicarboxylic acid. Either end can form an ester linkage to CoA and be subjected to /3-oxidation, producing a... 

Eukaryotic cells face a dilemma in providing suitable amounts of substrate for fatty acid synthesis. Sufficient quantities of acetyl-CoA, malonyl-CoA, and NADPH must be generated in the cytosol for fatty acid synthesis. Malonyl-CoA is made by carboxylation of acetyl-CoA, so the problem reduces to generating sufficient acetyl-CoA and NADPH. 

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