Genomics, comparative

Puente XS, Sanchez LM, Overall CM et al (2003) Human and mouse proteases a comparative genomic approach. Nat Rev Genet 4 544—558... 

Kasamatsu A, Endo Y, Uzawa K, Nakashima D, Koike H, Hashitani S, et al. Identification of candidate genes associated with salivary adenoid cystic carcinomas using combined comparative genomic hybridization and oligonucleotide microarray analyses. Int J Biochem Cell Biol 2005 37 1869-80. 

Pellegrini, M., Marcotte, E. M., Thompson, M. J., Eisenberg, D., and Yeates, T. O. (1999). Assigning protein functions by comparative genome analysis Protein phylogenetic profiles. Proc. Natl. Acad. Sci. USA 96, 4285-4288. 

L., Grimwood, J., Davis, R.W. and Stephens, R.S. (1999) Comparative genomes of Chlamydia pneumoniae dead C. trachomatis. Nature Genetics 21, 385-389. 

The science of microbial genomics requires special attention, in part, because of its medical and economic importance. Even more so, microbial genomics provide important lessons for all of computational biology and comparative genomics, and therefore, microbial genomes are prototypes for the future of pharmacogenomics. 

Subramanian G, Koonin EV, Aravind L. Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum. Infect Im-mun 2000 68(3] 1633-1648. 

DNA QUALITY EVALUATED BY ARRAY -BASED COMPARATIVE GENOMIC HYBRIDIZATION... 

Array-based comparative genomic hybridization (a-CGH) is a genomic analysis system that allows identification of alterations in DNA sequence and copy number, with a potential goal of individualized diagnosis and targeted cancer therapy.35,36 A number of reports have described application of a-CGH to DNA extracted from FFPE tissues, with variable results.35,37 38... 

DeVries S, Nyante S, Korkola J, et al. Array-based comparative genomic hybridization from formalin-fixed, paraffin-embedded breast tumors. J. Mol. Diagn. 2005 7 65-71. 

Pinkel D, Albertson DG. Comparative genomic hybridization [Review]. Annual Review of Genomics and Human Genetics 2005 6 331-354. 

Ylstra B, Van den IJssel P, Carvalho B, et al. BAC to the future or oligonucleotides a perspective for micro array comparative genomic hybridization (array CGH). Nucleic Acids Res. 2006 34 445 150. 

Daigo Y, Chin S-F, Gorringe KL, et al. Degenerate oligonucleotide primed-polymerase chain reaction-based array comparative genomic hybridization for extensive Amplicon profiling of breast cancers. A new approach for the molecular analysis of paraffin-embedded cancer tissue. Am. J. Pathol. 2001 158 1623-1631. 

Klein CA, Schmidt-Kittler O, Schardt JA, et al. Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells. Proc. Natl. Acad. Sci. USA 1999 96 4494-4499. 

Flajnik, M.F., and Kasahara, M., Comparative genomics of the MHC Glimpses into the evolution of the adaptive immune system, Immunity, 15, 351, 2001. 

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