Carbohydrate tools

Analytical tools have been developed in order to identify carbohydrate structures as well as carbohydrate-binding proteins and to understand their underlying structure-function relationships of protein-carbohydrate and carbohydrate-carbohydrate interactions lectin arrays [16], glycan microarrays [17, 18], glyco-nanoparticles [19], frontal affinity chromatography [20] and carbohydrate tools for metabolic labeling [21]. 

Y. Chevolot, Surface Photoimmobilization of Aryl Diazirine Containing Carbohydrates — Tools toward Surface Glycoengineering (PhD Thesis EPFL, 1999), no. 1995. 

Chevolot Y (1999) Thesis Surface photoimmobilisation of aryl dyazirine containing carbohydrates - tools toward surface glycoengineering. ficole Polytechnique Federale de Lausanne, Lausanne... 

Vicinal diol and a hydroxy carbonyl functions in carbohydrates are cleaved by periodic acid Used analytically as a tool for structure determination... 

Early investigators grouped alkaloids according to the plant families in which they are found, the stmctural types based on their carbon framework, or their principal heterocycHc nuclei. However, as it became clear that the alkaloids, as secondary metaboUtes (30—32), were derived from compounds of primary metabohsm (eg, amino acids or carbohydrates), biogenetic hypotheses evolved to link the more elaborate skeletons of alkaloids with their simpler proposed pregenitors (33). These hypotheses continue to serve as valuable organizational tools (7,34,35). 

Kinetic isotope effects are an important factor in the biology of deuterium. Isotopic fractionation of hydrogen and deuterium in plants occurs in photosynthesis. The lighter isotope is preferentially incorporated from water into carbohydrates and tipids formed by photosynthesis. Hydrogen isotopic fractionation has thus become a valuable tool in the elucidation of plant biosynthetic pathways (42,43). 

The overall scope of this book is the implementation and application of available theoretical and computational methods toward understanding the structure, dynamics, and function of biological molecules, namely proteins, nucleic acids, carbohydrates, and membranes. The large number of computational tools already available in computational chemistry preclude covering all topics, as Schleyer et al. are doing in The Encyclopedia of Computational Chemistry [23]. Instead, we have attempted to create a book that covers currently available theoretical methods applicable to biomolecular research along with the appropriate computational applications. We have designed it to focus on the area of biomolecular computations with emphasis on the special requirements associated with the treatment of macromolecules. 

Calibration curve in spectrophotometry, 674, 753, 755, 800 statistical tests for, 144 Calmagite 318 Calomel electrode 63 forms of, 551 potential of, 554 preparation of, 551 Capacitative cell 527 Capacitance as an analytical tool, 528 Carbohydrates D. of hydroxyl groups in, (ti)) 306... 

The carbohydrate has sites for ionic interaction (clusters of sialic acid or sulphate residues) and also hydrophobic interaction (clusters of hydrophobic methyl groups offered by fucose residues). Sedimentation velocity has been a valuable tool in the selection of appropriate mucoadhesives and in the characterisation of the complexes [ 138-143]. 

From the previous discussion, it is clear that relaxation experiments constitute a very powerful tool for investigation of the structure and conformation of carbohydrate molecules in solution. However, the nature of the individual problem may determine which relaxation experiment should be chosen in order to extract interproton distances to the desired accuracy of < 0.2 A. Although the limitations and relative merits of all of the various relaxation methods have not yet been systematically studied, accumulated experience provides some direct knowledge about the range of errors associated with relaxation experiments. 

Santoyo-Gonzdlez F, Hernandez-Mateo F (2007) Azide-Alkyne 1,3-Dipolar Cycloadditions a Valuable Tool in Carbohydrate Chemistry. 7 133-177 Saraboji K, see Ponnuswamy MN (2006) 3 81-147... 

N. V. Bovin and H.-J. Gabius, Polymer immobilized carbohydrate ligands versatile chemical tools for biochemistry and medical science, Chem. Soc. Rev., 24 (1995) 413—421. 

F. Santoyo-Gonzalez and F. Hemandez-Mateo, Azide-alkyne 1, 3-dipolar cycloadditions A valuable tool in carbohydrate chemistry, Top. Heterocycl. Chem., 7 (2007) 133-177. 

Vliegenthart, J.F.G., Dorland, L., and van Halbeek, H. (1983) High-resolution, lH-nuclear magnetic resonance spectroscopy as a tool in the structural analysis of carbohydrates related to glycoproteins. Adv. Carbohydr. Chem. Biochem. 41, 209-374. 

The analytical phase generally involves the use of very dilute solutions and a relatively high ratio of oxidant to substrate. Solutions of a concentration of 0.01 M to 0.001 M (in periodate ion) should be employed in an excess of two to three hundred percent (of oxidant) over the expected consumption, in order to elicit a valid value for the selective oxidation. This value can best be determined by timed measurements of the oxidant consumption, followed by the construction of a rate curve as previously described. If extensive overoxidation occurs, measures should be taken to minimize it, in order that the break in the curve may be recognized, and, thence, the true consumption of oxidant. After the reaction has, as far as possible, been brought under control, the analytical determination of certain simple reaction-products (such as total acid, formaldehyde, carbon dioxide, and ammonia) often aids in revealing what the reacting structures actually were. When possible, these values should be determined at timed intervals and be plotted as a rate curve. A very useful tool in this type of investigation, particularly when applied to carbohydrates, has been the polarimeter. With such preliminary information at hand, a structure can often be proposed, or the best conditions for a synthetic operation can be outlined. 

In carbohydrate chemistry, the preparation of ethers that are stable in the presence of acids, bases, and aqueous alkali is an important analytical and synthetic tool. The methods used for the etherification of hydroxyl groups51 generally employ reactions of unprotected sugars and glycosides with methyl, allyl, benzyl, triphenylmethyl, and alkylsilyl halides in the presence of a variety of aqueous and nonaqueous bases. 

In the last twenty years, nitro sugars became powerful chemical tools on account of their usefulness for the construction of carbon-carbon bonds prior to the transformation of the nitro group into a variety of other chemical functionalities. As a result, a diverse range of funcionalized carbohydrates and other derivatives as carbasugars, cyclitols and heterocycles have been prepared. 

Carbohydrates not only interact with protein receptors, but also with other carbohydrates and nucleic acids. Recently, gold nanoparticles (GNPs) have been prepared as new multivalent tools that mimic carbohydrate presentation on the cell surface. Using this tool, a weak calcium-mediated carbohydrate-carbohydrate interaction has been detected using NMR, employing... 

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