Biotin protein cofactor

Hydroxy- 9-methylglutaryl CoA further yields acetyl CoA and acetoacetic acid, as was shown earlier by Coon et cU. (I48). In biotin deficiency the carboxylation reaction does not occur. It was shown by Lynen et al. that the actual carboxylation is preceded by the enzymic dehydration (rf jS-hydroxyisovaleryl CoA to /8-methylcrotonyl CoA, which is the true substrate for the entry of CO2. TTiis occurs at the expense of the hydrolysis of the terminal P04 of ATP. The unsaturated intermediate is then saturated by the addition of H2O to yield the final product. The critical step of this carboxylation is the conversion of CO2 to a reactive form. The analogy of the biochemical activation of other substances through an acyl adenylate type of compound did not fit CO2 activation. The final mechanism of the activation of CO2 was derived from the discovery that the carboxylase enzyme was a biotin-protein. This observation explains earlier work 149) which indicated that biotin is a cofactor of the fatty acid-synthesizing enzyme system. When the purified carboxylase was incubated with P and ATP an exchange reaction of phosphate occurred, which was inhibited by avidin, a protein which specifically binds biotin. This indicated that the primary reaction in CO2 fixation is the combination of ATP with the biotin-protein enzyme to yield ADP biotin-protein -f P. The active CO2 is then the product of an exchange reaction between ADP and C02 which is finally attached to the biotin-protein complex. 

Some enzymes associate with a nonprotein cofactor that is needed for enzymic activity. Commonly encountered cofactors include metal ions such as Zn2+ or Fe2+, and organic molecules, known as coenzymes, that are often derivatives of vitamins. For example, the coenzyme NAD+contains niacin, FAD contains riboflavin, and coenzyme A contains pantothenic acid. (See pp. 371-379 for the role of vitamins as precursors of coenzymes.) Holoenzyme refers to the enzyme with its cofactor. Apoenzyme refers to the protein portion of the holoenzyme. In the absence of the appropriate cofactor, the apoenzyme typically does not show biologic activity. A prosthetic group is a tightly bound coenzyme that does not dissociate from the enzyme (for example, the biotin bound to carboxylases, see p. 379). 

What structural features of biotin and lipoic acid allow these cofactors to be covalently bound to a specific protein in a multienzyme complex yet participate in reactions at active sites on other enzymes of the complex ... 

Additional reaction components can be used that may enhance or be essential for catalytic activity in a particular system. These components may serve functions analogous to the cofactors used by protein catalysts (e. g., ATP, NADH, or metal ions). These components can be supplied free in solution or incorporated into the RNA library as previously described. As an example, Figure 8.5 oudines the RNA-catalyzed carbon-carbon bond-forming [4 + 2] cycloadclition reaction between a tethered diene substrate, (2E.4E)-hexa-2,4-clien-l-0-PEG (1), and 1-biotinamido-4-[A -(maleimidomethyl)cyclohexanecarboxamido] butane (BMCC-biotin, 2), a clienophile that is free in solution. The RNA catalyzes the formation of (3), which contains biotin for partitioning purposes. 

The determination of the quantity of protein bound to the insoluble carrier sometimes causes difficulties. The methods usually applied are laborious or somewhat inaccurate. Labeling of assayed protein, for instance with C-acet-anhydride, makes it possible to carry out a very fast and exact determination of immobilized protein The determination of bound enzyme C-labeled aldolase after its immobilization on polyacrylamide can serve as an example The concentration measurements of certain proteins are based on their ability to bind certain ligands. Radiolabels such as or H-biotin have been used for the determination of avidin by direct binding or for biotin assay by isotopic dilution Cofactor and fluorescent labeled ligands have been also used for the monitoring of specific protein binding reactions. 

The [Fe4S4(LS3)(SR )] cluster has been shown to engage in an electrophilic attack of the sulfonium ion, while causing reductive cleavage of the cofactor S-adenosylmethionine. This behavior is analogous to the enzymatic action of biotin synthase and other enzymes in the S-adenosylmethionine family see Iron-Sulfur Proteins). ... 

Biotin (vitamin H, 6, Figs. 1 and 10) acts a cofactor of carboxylases. It can be produced in bacteria, plants, and some fungi (46). The biosynthetic pathway involves four steps that start from alanine (78) and pimeoyl-CoA (79). Carboxylation and cyclization of 81 affords dethiobiotin (82), which is then converted into biotin (6) by the iron/sulfur protein, biotin synthase, in an unusual radical mechanism (47). 

Branching of pathways is relevant in several cases. Thus, intermediates of the porphyrin biosynthetic pathway serve as precursors for chlorophyll (17, Fig. 2) and for the corrinoid ring systems of vitamin B12 (20, Fig. 2) (17). 1-Deoxy-D-xylulose 5-phosphate (43) serves as an intermediate for the biosynthesis of pyridoxal 5 -phosphate (39, Fig. 5), for the terpenoid precursor IPP (86) via the nonmevalonate pathway (Fig. 11), and for the thiazole moiety of thiamine pyrophosphate (46, Fig. 4). 7,8-Dihydroneopterin triphosphate (29, Fig. 3) serves as intermediate in the biosynthetic pathways of tetrahydrofolate (33) and tetrahydrobiopterin (31). The closely related compound 7,8-dihydroneopterin 2, 3 -cyclic phosphate is the precursor of the archaeal cofactor, tetrahydromethanopterin (34) (58). A common pyrimidine-type intermediate (23) serves as precursor for flavin and deazaflavin coenzymes. Various sulfur-containing coenzymes (thiamine (9), lipoic acid (7), biotin (6), Fig. 1) use a pyrosulfide protein precursor that is also used for the biosynthesis of inorganic sulfide as a precursor for iron/sulfur clusters (12). 

Biotin forms part of several enzyme systems and is necessary for normal growth and body function. Biotin functions as a cofactor for enzymes involved in carbon dioxide fixation and transfer. These reactions are important in the metaboHsm of carbohydrates, fats, and proteins, as well as promotion of the synthesis and formation of nicotinic acid, fatty acids, glycogen, and amino acids (5—7). Biotin is absorbed unchanged in the upper part of the small intestine and distributed to all tissues. Highest concentrations are found in the Hver and kidneys. Little information is available on the transport and storage of biotin in humans or animals. A biotin level in urine of approximately 160 nmol/24 h or 70 nmol/L, and a circulating level in blood, plasma, or serum of approximately 1500 pmol/L seems to indicate an adequate supply of biotin for humans. However, reported levels for biotin in the blood and urine vary widely and are not a reHable indicator of nutritional status. 

Inborn errors of metabolism may be due to propionyl-CoA carboxylase deficiency, defects in biotin transport or metabolism, methylmalonyl-CoA mutase deficiency, or defects in adenosylcobalamin synthesis. The former two defects result in propionic acidemia, the latter two in methylmalonic acidemia. All cause metabolic acidosis and developmental retardation. Organic acidemias often exhibit hyperammonemia, mimicking ureagenesis disorders, because they inhibit the formation of N-acetylglutamate, an obligatory cofactor for carbamoyl phosphate synthase (Chapter 17). Some of these disorders can be partly corrected by administration of pharmacological doses of the vitamin involved (Chapter 38). Dietary protein restriction is therapeutically useful (since propionate is primarily derived from amino acids). Propionic and methylmalonyl acidemia (and aciduria) results from vitamin B12 deficiency (e.g., pernicious anemia Chapter 38). 

The answer is b. (Murray, pp 627-661. Scriver, pp 3897-3964. Sack, pp 121-138. Wilson, pp 287-320.) The vitamin biotin is the cofactor required by carboxylating enzymes such as acetyl CoA, pyruvate, and propionyl CoA carboxylases. The fixation of CO2 by these biotin-dependent enzymes occurs in two stages. In the first, bicarbonate ion reacts with adenosine triphosphate (ATP) and the biotin carrier protein moiety of the enzyme in the second, the active CO2 reacts with the substrate—e.g., acetyl CoA. 

The chemogenomics approach has not been applied in the identification of lipoamide-, biotin-, and cobalamin-dependent enzymes. Given the stable, covalent bond between lipoamide and biotin with enzymes, only the replacement with inactive cofactor analogs during protein folding can lead to the identification of enzymes associated to loss of function. 

A primary example of biological binding immobilization is the avidin-biotin complex. Biotin (vitamin H) is a low-molecular-weight cofactor distributed ubiquitously in cells. Biotin specifically binds to avidin, an egg white protein, or to strepavidin, a similar protein which occurs in Streptomyces sp. 

Oxoglutarate can also serve as a starter piece for elongation by the oxoacid pathway. Extension by three carbon atoms yields 2-oxosuberate (Eq. 21-1). This dicarboxylate is converted by reactions shown in Eq. 24-39 into biotin and in archaebacteria into the coenzyme 7-mercaptoheptanoylthreonine phosphate (HTP), Eq. 21-1. Lipoic acid is also synthesized from a fatty acid, the eight-carbon octanoate. A fatty acid synthase system that utilizes a mitochondrial ACP may have as its primary fimction the synthesis of ocfanoate for lipoic acid formation. The mechanism of insertion of the two sulfur atoms to form lipoate (Chapter 15) is imcerfain. If requires an iron-sulfur protein jg probably similar to the corresponding process in the synthesis of biotin (Eq. 24-39)9 93a formation of HTP (Eq. 21-1). One component of the archaebacterial cofactor methano-furan (Chapter 15) is a tetracarboxylic acid that is formed from 2-oxoglufarafe by successive condensations with two malonic acid imits as in fatty acid synthesis. ... 

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