Biosynthesis enzyme complexes

Bacitracin. Bacitracin, a cycHc peptide active against gram-positive bacteria, was discovered in 1943. Bacitracin received dmg certification in 1949 (60—62). Whereas human usage of bacitracin is almost exclusively topical, the vast majority of bacitracin manufactured worldwide is used as an animal feed additive. Reviews of work on bacitracin include its chemistry (63—67), comprehensive aspects (62), medical aspects (62,68), biosynthesis on large enzyme complexes and genetics (69—71), and production (71,72). 

Nature gives us some illustrative examples of iterative methodologies in its biochemical mechanisms. The fatty acid-polyketide biosynthesis is one of them. The assembly of acyl units by sequential Claisen-type condensations to form a polyketide or fatty acid takes place at a multi-enzyme complex, at which the initial molecule is lengthened by one C2-unit per pass of a reaction cycle (Fig. 2). 

The biosynthesis of polyketides (including chain initiation, elongation, and termination processes) is catalyzed by large multi-enzyme complexes called polyketide synthases (PKSs). The polyketides are synthesized from starter units such as acetyl-CoA, propionyl-CoA, and other acyl-CoA units. Extender units such as malonyl-CoA and methylmalonyl-CoA are repetitively added via a decarboxylative process to a growing carbon chain. Ultimately, the polyketide chain is released from the PKS by cleavage of the thioester, usually accompanied by chain cyclization [49]. 

This great structural variety, however, complicates the specific biosynthesis of complex oligosaccharides. In general, the formation of each saccharide linkage requires specific enzymes ( one linkage—more than one enzyme ) and thus, in comparison with the enzymic synthesis of proteins and nucleic acids, much more effort is needed. 

Once an enzyme-catalysed reaction has occurred the product is released and its engagement with the next enzyme in the sequence is a somewhat random event. Only rarely is the product from one reaction passed directly onto the next enzyme in the sequence. In such cases, enzymes which catalyse consecutive reactions, are physically associated or aggregated with each other to form what is called a multi enzyme complex (MEC). An example of this arrangement is evident in the biosynthesis of saturated fatty acids (described in Section 6.30). Another example of an organized arrangement is one in which the individual enzyme proteins are bound to membrane, as for example with the ATP-generating mitochondrial electron transfer chain (ETC) mechanism. Intermediate substrates (or electrons in the case of the ETC) are passed directly from one immobilized protein to the next in sequence. 

Glutamine also supplies an amino function to start off purine nucleotide biosynthesis. This complex little reaction is again an Sn2 reaction on PRPP, but only an amino group from the amide of glutamine is transferred. The product of the enzymic reaction is thus 5-phosphoribosylamine. 

The terminal complex hypothesis proposes that the cellulose synthesizing enzyme complex can be visualized with electron microscopy. Terminal complex is the name given to collections of plasma membrane particles thought to represent the cellulose synthase. While direct evidence is still not available to support this hypothesis, the amount of indirect supporting evidence has grown dramatically in the past few years. The relationship between terminal complexes, cellulose physical structure and the biochemical events of cellulose biosynthesis will be discussed. 

The biosynthesis of fatty acids such as palmitate thus requires acetyl-CoA and the input of chemical energy7 in two forms the group transfer potential of ATP and the reducing power of NADPH. The ATP is required to attach C02 to acetyl-CoA to make malonyl-CoA the NADPH is required to reduce the double bonds. We return to the sources of acetyl-CoA and NADPH soon, but first let s consider the structure of the remarkable enzyme complex that catalyzes the synthesis of fatty acids. 

The incorporation of the D-alanine ester groups is, presumably, the last stage in the biosynthesis of teichoic acids. Several organisms possess enzymes which activate D-alanine, that is, which form a D-alanyl-adenosine 5-phosphate-enzyme complex but, so far, there has been no demonstration of incorporation, in cell-free systems, of D-alanine into teichoic acid or any... 

Many of the unusual compounds that indicate the exciting chemistry to be discovered in marine natural products are polyketides. Polyketides are a family of structurally complex natural products that include a number of important pharmaceuticals. They are produced primarily by microorganisms through a specialized metabolism that is a variation of fatty acid biosynthesis [430]. Polyketides fall into two structural classes aromatic and complex. Polyketides are formed by enzyme complexes... 

Chapters 17 through 21 deal with carbohydrate-enzyme systems. Hehre presents some new ideas on the action of amylases. Kabat presents some new immunochemical studies on the carbohydrate moiety of certain water-soluble blood-group substances and their precursor antigens. Hassid reviews the role of sugar phosphates in the biosynthesis of complex saccharides. Pazur and co-workers present information obtained by isotopic techniques on the nature of enzyme-substrate complexes in the hydrolysis of polysaccharides. Gabriel presents a common mechanism for the production of 6-deoxyhexoses. An intermediate nucleoside-5 -(6-deoxyhexose-4-ulose pyrophosphate) is formed in each of the syntheses. 

Glycosyl—Enzyme Complex Intermediates in Biosynthesis of Complex Saccharides. The synthesis of nucleoside diphosphate sugars involves the transfer of a nucleotidyl group from a nucleoside triphosphate to a sugar 1-phosphate with the simultaneous release of pyrophosphate according to the following general reaction (11) ... 

Enzyme complexes occur in the endoplasmic reticulum of animal cells that desaturate at A5 if there is a double bond at the A8 position, or at A6 if there is a double bond at the A9 position. These enzymes are different from each other and from the A9-desaturase discussed in the previous section, but the A5 and A6 desaturases do appear to utilize the same cytochrome b5 reductase and cytochrome b5 mentioned previously. Also present in the endoplasmic reticulum are enzymes that elongate saturated and unsaturated fatty acids by two carbons. As in the biosynthesis of palmitic acid, the fatty acid elongation system uses malonyl-CoA as a donor of the two-carbon unit. A combination of the desaturation and elongation enzymes allows for the biosynthesis of arachidonic acid and docosahexaenoic acid in the mammalian liver. As an example, the pathway by which linoleic acid is converted to arachidonic acid is shown in figure 18.17. Interestingly, cats are unable to synthesize arachidonic acid from linoleic acid. This may be why cats are carnivores and depend on other animals to make arachidonic acid for them. Also note that the elongation system in the endoplasmic reticulum is important for the conversion of palmitoyl-CoA to stearoyl-CoA. 

The first two steps in the biosynthesis of tryptophan in Salmonella typhimurium involve the enzyme complex anthranilate synthase-phosphoribosyltransferase, which is a tetramer having two subunits of each enzyme. The anthranilate synthase catalyzes reaction (7) and the phos-phoribosyltransferase catalyzes two reactions the N-terminal portion cleaves glutamine to glutamate giving NH3 for the anthranilate synthase, while the C-terminal portion catalyzes reaction (8).3,1,312 All these reactions require M2+ cations. Orotate phosphoribosyltransferase binds four Mn2+ ions in a cooperative fashion kinetic data have been interpreted in a scheme where both metal-free and metal-containing enzyme catalyze the reaction.313... 

A -Piperideine (17) has been shown to be a precursor of quinolizidine alkaloids in whole plants (cf. Vol. 8, p. 3). However, neither it nor its self-condensation products could be detected as products in the enzymic reaction. [This conclusion is not completely unambiguous, albeit reasonably safe, because the products of the reaction of diamine oxidase, the first of which is (17), were simply compared with those of the alkaloid synthase reaction by g.l.c., and the products of the two reactions were found to be different].11 It seems likely at this stage that (17) is not normally implicated in quinolizidine biosynthesis but can be substituted for an enzyme-generated intermediate via its open form (32) (see Scheme 5). Since no intermediates earlier than (27) could be detected, it is suggested that biosynthesis in vitro and in vivo proceeds by a series of enzyme-linked intermediates (see Scheme 5), none of which is desorbed from the enzyme or enzyme-complex until (27) is liberated. However, in some plants, biosynthesis must stop with the liberation of a compound (31), having the lupinine skeleton... 

In prokaryotes, each of the reactions of fatty acid synthesis is catalyzed by a separate enzyme. However, in eukaryotes, the enzymes of the fatty acid synthesis elongation cycle are present in a single polypeptide chain, multifunctional enzyme complex, called fatty acid synthase. The fatty acid synthase complex exists as a dimer, with the ACP moiety shuttling the fatty acyl chain between successive catalytic sites, and from one subunit of the dimer to the other. It is, in effect, a highly efficient production line for fatty acid biosynthesis. 

The biosynthesis of polyketides is analogous to the formation of long-chain fatty acids catalyzed by the enzyme fatty acid synthase (FAS). These FASs are multi-enzyme complexes that contain numerous enzyme activities. The complexes condense coenzyme A (CoA) thioesters (usually acetyl, propionyl, or malonyl) followed by a ketoreduction, dehydration, and enoylreduction of the [3-keto moiety of the elongated carbon chain to form specific fatty acid products. These subsequent enzyme activities may or may not be present in the biosynthesis of polyketides. 

Finally, some authors propose the use of enzyme mixtures for the biosynthesis of complex molecules. A cell free protein synthesis (CFPS) system is a novel approach that was successfully used for the production of complex mammalian proteins with multiple disulfide bonds (Bhatta-charya, 2004). However, even if the technical potential of this method is proved, its economical feasibility has still to be proven. 

We continue our attempts to gain some control over the construction of D. vulgaris bidirectional hydrogenase in E. coli not only to come to an understanding of the biosynthesis of complex Fe/S enzymes, but also to bring the candidacy of this protein for biotechnological applications within the realm of possibility. 

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