Bond, disulfide

The second application of the CFTI approach described here involves calculations of the free energy differences between conformers of the linear form of the opioid pentapeptide DPDPE in aqueous solution [9, 10]. DPDPE (Tyr-D-Pen-Gly-Phe-D-Pen, where D-Pen is the D isomer of /3,/3-dimethylcysteine) and other opioids are an interesting class of biologically active peptides which exhibit a strong correlation between conformation and affinity and selectivity for different receptors. The cyclic form of DPDPE contains a disulfide bond constraint, and is a highly specific S opioid [llj. Our simulations provide information on the cost of pre-organizing the linear peptide from its stable solution structure to a cyclic-like precursor for disulfide bond formation. Such... 

The Cyc conformer represents the structure adopted by the linear peptide prior to disulfide bond formation, while the two /3-turns are representative stable structures of linear DPDPE. The free energy differences of 4.0 kcal/mol between pc and Cyc, and 6.3 kcal/mol between pE and Cyc, reflect the cost of pre-organizing the linear peptide into a conformation conducive for disulfide bond formation. Such a conformational change is a pre-requisite for the chemical reaction of S-S bond formation to proceed. 

Y. Wang and K. Kuczera. Conformational free energy surface of the linear DPDPE peptide Cost of pre-organization for disulfide bond formation. J. Am. Chem. Soc., submitted, 1997. 

Y. Wang and K. Kuczera. Molecular dynamics simulations of cyclic and linear DPDPE Influence of the disulfide bond on peptide fiexibility. J. Phys. Chem., 100 2555-2563, 1996. 

Note A molecular dynamics sim u lation cannot overcome con -strain is imposed by covalent bonds, such as disulfide bonds and rings. Check that such constraints are acceptable. Search other possible structures in separate simulations. 

Thiazole disulfides are reported to yield quantitatively A-4-thiazoline-2-thiones under treatment with zinc powder in acetic acid (326). The disulfide bond can be broken on heating at 100 to 260°C and (or) by alkali. This property has been used for photographic emulsions (327). The disulfide (136) (R = 4-(D-arabmo-tetrahydroxybutyD can be cleaved readily by aqueous sodium hydroxyde. carbonate, or hydrogen carbonate (149) to give 135 a by-product, 4-(D-arabino-ietrahydroxybutyl) thiazole... 

Sanger also determined the sequence of the A chain and identified the cysteine residues involved m disulfide bonds befween fhe A and B chains as well as m fhe disulfide linkage wifhin fhe A chain The complefe insulin sfruefure is shown m Figure 27 11 The sfruefure shown is fhaf of bovine insulin (from cattle) The A chains of human insulin and bovine insulin differ m only fwo ammo acid residues fheir B chains are identical except for the ammo acid at the C terminus... 

The shape of a large protein is influenced by many factors including of course Its primary and secondary structure The disulfide bond shown m Figure 27 18 links Cys 138 of carboxypeptidase A to Cys 161 and contributes to the tertiary structure Car boxypeptidase A contains a Zn " ion which is essential to the catalytic activity of the enzyme and its presence influences the tertiary structure The Zn ion lies near the cen ter of the enzyme where it is coordinated to the imidazole nitrogens of two histidine residues (His 69 His 196) and to the carboxylate side chain of Glu 72... 

The primary structure of a peptide is given by its ammo acid sequence plus any disulfide bonds between two cysteine residues The primary structure is determined by a systematic approach m which the protein is cleaved to smaller fragments even individual ammo acids The smaller fragments are sequenced and the mam sequence deduced by finding regions of overlap among the smaller peptides... 

GS = choriosomatomammotropin = same amino acid as GH-N. Disulfide bonds cormect Cys molecules at positions 53—165 and 182—189. Asn-140 of... 

The amino acid sequences of hCS-A, hCS-B, and hCS-V are shown in relation to GH in Figure 1. The sequence of hCS-V is predicted from the DNA coding sequence and apparentiy does not possess amino acids 8—55 relative to GH and the other hCS molecules. It is not certain whether hCS-V is expressed or what function it may have. Human CS-A and hCS-B share approximately 85% identity with GH and also possess the disulfide bonds between Cys 53—165 and Cys 182—189 which produce the long and short S—loops characteristic of the PRL/GH family. 

Human growth hormone is a single polypeptide chain of 191 amino acids (qv) having two disulfide bonds, one between Cys-53 and Cys-165, forming a large loop in the molecule, and the other between Cys-182 and Cys-189, forming a small loop near the C-terminus. The stmcture of hGH is shown in Figure 1 molecular mass is 22,125 the empirical formula is C qH 29N 262 300 7 ... 

Fig. 1. Primary stmcture of hGH showing the amino acid sequence and the disulfide bonds.

Size Isomers. In solution, hGH is a mixture of monomer, dimer, and higher molecular weight oligomers. Furthermore, there are aggregated forms of hGH found in both the pituitary and in the circulation (16,17). The dimeric forms of hGH have been the most carefully studied and there appear to be at least three distinct types of dimer a disulfide dimer connected through interchain disulfide bonds (8) a covalent or irreversible dimer that is detected on sodium dodecylsulfate- (SDS-)polyacrylamide gels (see Electroseparations, Electrophoresis) and is not a disulfide dimer (19,20) and a noncovalent dimer which is easily dissociated into monomeric hGH by treatment with agents that dismpt hydrophobic interactions in proteins (21). In addition, hGH forms a dimeric complex with ( 2). Scatchard analysis has revealed that two ions associate per hGH dimer in a cooperative... 

Fig. 1. Amino acid sequence for the A- and B-chains of human iasulin [11061-68-0] where soHd lines denote disulfide bonds. Porciae iasulin [12584-58-6] differs by one amino acid ia the B-chaia where alanine replaces threonine at positioa 30. Boviae iasulia [11070-73-8] differs by three amino acids. la the A-chain alanine replaces the threonine at positioa 8 and valine replaces the isoleuciae at position 10. In the B-chain there is an alanine at position 30.

Reactions of the Disulfide Group. Besides the thiol end groups, the disulfide bonds also have a marked influence on both the chemical and physical properties of the polysulftde polymers. One of the key reactions of disulfides is nucleophilic attack on sulfur (eq. 4). The order of reactivity for various thiophiles has been reported as (C2H O) P > R, HS , C2H5 S- >C,H,S- >C,H,P,... 

Disulfides. The introduction of disulfide bonds can have various effects on protein stability. In T4 lyso2yme, for example, the incorporation of some disulfides increases thermal stability others reduce stability (47—49). Stabili2ation is thought to result from reduction of the conformational entropy of the unfolded state, whereas in most cases the cause of destabili2ation is the introduction of dihedral angle stress. In natural proteins, placement of a disulfide bond at most positions within the polypeptide chain would result in unacceptable constraint of the a-carbon chain. 

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