Metal-containing enzymes

Index of Review Articles and Specialist Texts Table 18 Metal-containing Enzymes... 

Blomberg MRA, Siegbahn PEM. 2006. Quantum chemistry applied to the mechanisms of transition metal containing enzymes—Cytochrome c oxidase, a particularly challenging case. J Comput Chem 27 1373. 

In the first family, the metal is coordinated by one molecule of the pterin cofactor, while in the second, it is coordinated to two pterin molecules (both in the guanine dinucleotide form, with the two dinucleotides extending from the active site in opposite directions). Some enzymes also contain FejSj clusters (one or more), which do not seem to be directly linked to the Mo centers. The molybdenum hydroxylases invariably possess redox-active sites in addition to the molybdenum center and are found with two basic types of polypeptide architecture. The enzymes metabolizing quinoline-related compounds, and derivatives of nicotinic acid form a separate groups, in which each of the redox active centers are found in separate subunits. Those enzymes possessing flavin subunits are organized as a2jS2A2, with a pair of 2Fe-2S centers in the (3 subunit, the flavin in the (3 subunit, and the molybdenum in the y subunit. 

One of the most important metals with regard to its role in enzyme chemistry is zinc. There are several significant enzymes that contain the metal, among which are carboxypeptidase A and B, alkaline phosphatase, alcohol dehydrogenase, aldolase, and carbonic anhydrase. Although most of these enzymes are involved in catalyzing biochemical reactions, carbonic anhydrase is involved in a process that is inorganic in nature. That reaction can be shown as... 

Although the mechanism is not completely understood, the rate of the reaction shown in Eq. (22.39) is increased by several orders of magnitude. Other metal-containing enzymes contain Mg, Mn, K, Cu, Fe, Ni, and Mo. 

In contrast to superoxide, which participates in one-electron transfer reactions as a reductant, nitric oxide is apparently able to oxidize various transition metal-containing proteins and enzymes. The study of NO reaction with hemoglobin has been started many years ago when... 

Although metal-catalyzed protein oxidation is undoubtedly a very effective oxidative process, the origin of free metal ions under in vivo conditions is still uncertain (see Chapter 21). However, protein oxidation can probably be initiated by metal-containing enzymes. Mukhopadhyay and Chatterjee [31] have shown that NADPH-stimulated oxidation of microsomal proteins was mediated by cytochrome P-450 and occurred in the absence of free metal ions. It is important that in contrast to metal ion-stimulated oxidation of proteins, ascorbate inhibited and not enhanced P-450-dependent protein oxidation reacting with the oxygenated P-450 complex. The following mechanism of P-450-dependent oxidation of the side chain protein amino acid residues has been proposed ... 

As the above discussion indicates, assigning mechanisms to simple anation reactions of transition metal complexes is not simple. The situation becomes even more difficult for a complex enzyme system containing a metal cofactor at an active site. Methods developed to study the kinetics of enzymatic reactions according to the Michaelis-Menten model will be discussed in Section 2.2.4. 

To successfully describe the structure and function of nitrogenase, it is important to understand the behavior of the metal-sulfur clusters that are a vital part of this complex enzyme. Metal-sulfur clusters are many, varied, and usually involved in redox processes carried out by the protein in which they constitute prosthetic centers. They may be characterized by the number of iron ions in the prosthetic center that is, rubredoxin (Rd) contains one Fe ion, ferredoxins (Fd) contain two or four Fe ions, and aconitase contains three Fe ions.7 In reference 18, Lippard and Berg present a more detailed description of iron-sulfur clusters only the [Fe4S4] cluster typical of that found in nitrogenase s Fe-protein is discussed in some detail here. The P-cluster and M center of MoFe-protein, which are more complex metal-sulfur complexes, are discussed in Sections 6.5.2. and 6.5.3. 

As described in Sect. 7.1, novel hybrid block copolymers comprising on one hand a classical synthetic polymer and on the other hand a metal-containing polymer, a synthetic or natural (proteine, enzyme, etc.) polypeptide have recently been synthesized. Other hybrid block copolymers containing inorganic blocks, dendrimers, etc. will certainly be prepared and thoroughly investigated in the next few years. 

Density functional theory (DFT) - a promising tool for studying transition metal containing enzymes... 

---