Binding cyclodextrins

An artificial metalloenzyme (26) was designed by Breslow et al. 24). It was the first example of a complete artificial enzyme, having a substrate binding cyclodextrin cavity and a Ni2+ ion-chelated nucleophilic group for catalysis. Metalloenzyme (26) behaves a real catalyst, exhibiting turnover, and enhances the rate of hydrolysis of p-nitrophenyl acetate more than 103 fold. The catalytic group of 26 is a -Ni2+ complex which itself is active toward the substrate 1, but not toward such a substrate having no metal ion affinity at a low catalyst concentration. It is appearent that the metal ion in 26 activates the oximate anion by chelation, but not the substrate directly as believed in carboxypeptidase. 

Low cholesterol egg products are formed by extraction of cholesterol from the egg. Attempts have been made to extract cholesterol by using hexane or by supercritical CO2 extraction methods (24,25). A whole egg product in which 80% of the cholesterol is removed by a process using beta-cyclodextrin, a starch derivative, added to egg yolks has been introduced. The cyclodextrin binds up to 80% of the cholesterol, the mixture is centrifuged, and the Hquid separated. The cholesterol-reduced yolk is then blended with egg white, pasteurized, and packed in asceptic containers to give a Hquid whole egg product having a shelf Hfe of 60 days under refrigeration (see Eood packaging). 

Table 4-3. Binding Constants and Rate Constants for Complex Formation between a-Cyclodextrin and Azo Dyes ...

Binding Forces Contributing to the Formation of Cyclodextrin Inclusion... 

Water plays a crucial role in the inclusion process. Although cyclodextrin does form inclusion complexes in such nonaqueous solvents as dimethyl sulfoxide, the binding is very weak compared with that in water 13 Recently, it has been shown that the thermodynamic stabilities of some inclusion complexes in aqueous solutions decrease markedly with the addition of dimethyl sulfoxide to the solutions 14,15>. Kinetic parameters determined for inclusion reactions also revealed that the rate-determining step of the reactions is the breakdown of the water structure around a substrate molecule and/or within the cyclodextrin cavity 16,17). 

In these equations, MR3 4, MR, and MR4 are the molar refractivities of 3- and 4-substituents, of R-, and of 4-substituents, respectively. All the equations exhibited positive coefficients of the MR terms. This suggests that the dispersion forces of substituents are actually responsible for the binding of ligands to cyclodextrin. Eq. 14 shows that the stability of a-cyclodextrin-RCOO complexes increases linearly up to MR = 4.0 and then falls off linearly. 

The above two models together with Tabushi s cyclodextrin bis(histamine)23) are really elabolate ones, each having a substrate binding cavity, but their catalytic activities are yet far behind of those of natural enzymes. They suggest the difficulties associated with the design of a metal ion center inside of a cavity which activates both substrate and catalytic groups. 

Several model systems related to metalloenzymes such as carboxypeptidase and carbonic anhydrase have been reviewed. Breslow contributed a great deal to this field. He showed how to design precise geometries of bis- or trisimidazole derivatives as in natural enzymes. He was able to synthesize a modified cyclodextrin having both a catalytic metal ion moiety and a substrate binding cavity (26). Murakami prepared a novel macrocyclic bisimidazole compound which has also a substrate binding cavity and imidazole ligands for metal ion complexation. Yet the catalytic activities of these model systems are by no means enzymic. 

The fact that f.a.b.-m.s. can be used to observe cluster ions has been exploited in a study of metal binding to cyclodextrins, and in an investigation of the complexes formed between a 3-O-methylmannose dodecasac-charide and alkyltrimethylammonium ions having decyl and hexadecyl as alkyl chains. In the latter study, the larger organic cation was shown to form the stronger complex. 

In addition, cyclodextrins, because of their hydrophobic cavity, are capable of hydrophobic binding of the diene and/or dienophile into the cyclodextrin cavity in water. Therefore, cyclodextrins with the... 

On the other hand, the use of a-cyclodextrin decreased the rate of the reaction. This inhibition was explained by the fact that the relatively smaller cavity can only accommodate the binding of cyclopentadiene, leaving no room for the dienophile. Similar results were observed between the reaction of cyclopentadiene and acrylonitrile. The reaction between hydroxymethylanthracene and N-ethylmaleimide in water at 45°C has a second-order rate constant over 200 times larger than in acetonitrile (Eq. 12.2). In this case, the P-cyclodextrin became an inhibitor rather than an activator due to the even larger transition state, which cannot fit into its cavity. A slight deactivation was also observed with a salting-in salt solution (e.g., quanidinium chloride aqueous solution). 

The method for creating acceptor sink condition discussed so far is based on the use of a surfactant solution. In such solutions, anionic micelles act to accelerate the transport of lipophilic molecules. We also explored the use of other sink-forming reagents, including serum proteins and uncharged cyclodextrins. Table 7.20 compares the sink effect of 100 mM (5-cyclodextrin added to the pH 7.4 buffer in the acceptor wells to that of the anionic surfactant. Cyclodextrin creates a weaker sink for the cationic bases, compared to the anionic surfactant. The electrostatic binding force between charged lipophilic bases and the anionic surfactant micelles... 

Chiral recognition of A-[Co(phen)3]3+ has been observed in a modified /3-cyclodextrin.772 Chiral discrimination has also been seen in photoinduced energy transfer from luminescent chiral lanthanoid complexes773 to [Co(phen)3]3+ and between photoexcited [Ru(bpy)3]2+ and [Co(phen)3]3+ co-adsorbed on smectite clays.774 The [Co(bpy)3]3+ ion has been incorporated into clays to generate ordered assemblies and also functional catalysts. When adsorbed onto hectorite, [Co(bpy)3]3+ catalyzes the reduction of nitrobenzene to aniline.775 The ability of [Co(phen)3]3+ to bind to DNA has been intensively studied, and discussion of this feature is deferred until Section 6.1.3.1.4. 

The condensation reactions described above are unique in yet another sense. The conversion of an amine, a basic residue, to a neutral imide occurs with the simultaneous creation of a carboxylic acid nearby. In one synthetic event, an amine acts as the template and is converted into a structure that is the complement of an amine in size, shape and functionality. In this manner the triacid 15 shows high selectivity toward the parent triamine in binding experiments. Complementarity in binding is self-evident. Cyclodextrins for example, provide a hydrophobic inner surface complementary to structures such as benzenes, adamantanes and ferrocenes having appropriate shapes and sizes 12) (cf. 1). Complementary functionality has been harder to arrange in macrocycles the lone pairs of the oxygens of crown ethers and the 7t-surfaces of the cyclo-phanes are relatively inert13). Catalytically useful functionality such as carboxylic acids and their derivatives are available for the first time within these new molecular clefts. 

Rhodopsin is a seven ot-helix trans-membrane protein and visual pigment of the vertebrate rod photoreceptor cells that mediate dim light vision. In this photoreceptor, retinal is the chromophore bound by opsin protein, covalently linked to Lys296 by a Schiff base linkage. Kpega et al.64 have studied NMR spectra of Schiff bases being derivatives of all-frans retinal and amino-p-cyclodextrins as a model of rhodopsin, where p-cyclodextrin plays a role of a binding pocket. On the basis of analysis of the chemical shift differences for the model compound in the presence and in the absence of adamantane carboxylate, it has been shown that the derivative of 3-amino-p-cyclodextrin forms dimer in water and retinoid is inserted into p-cyclodextrin cavity [31]. 

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