Analyzer mass spectra measured

As eluting peaks from a GC become narrower (as separation resolution increases), the need for faster scanning of the mass analyzer becomes more stringent. Even for GC peaks only a few seconds wide, at least a few complete mass spectra should be recorded so that they can be averaged together to form an approximation of the mass spectrum measured with a steady sample concentration in the ionization source. Modern mass analyzers, including... 

In many applications in mass spectrometry (MS), the sample to be analyzed is present as a solution in a solvent, such as methanol or acetonitrile, or an aqueous one, as with body fluids. The solution may be an effluent from a liquid chromatography (LC) column. In any case, a solution flows into the front end of a mass spectrometer, but before it can provide a mass spectrum, the bulk of the solvent must be removed without losing the sample (solute). If the solvent is not removed, then its vaporization as it enters the ion source would produce a large increase in pressure and stop the spectrometer from working. At the same time that the solvent is removed, the dissolved sample must be retained so that its mass spectrum can be measured. There are several means of effecting this differentiation between carrier solvent and the solute of interest, and thermospray is just one of them. Plasmaspray is a variant of thermospray in which the basic method of solvent removal is the same, but the number of ions obtained is enhanced (see below). 

By passing a continuous flow of solvent (admixed with a matrix material) from an LC column to a target area on the end of a probe tip and then bombarding the target with fast atoms or ions, secondary positive or negative ions are ejected from the surface of the liquid. These ions are then extracted into the analyzer of a mass spectrometer for measurement of a mass spectrum. As mixture components emerge from the LC column, their mass spectra are obtained. 

The term Q/TOF is used to describe a type of hybrid mass spectrometer system in which a quadrupole analyzer (Q) is used in conjunction with a time-of-flight analyzer (TOP). The use of two analyzers together (hybridized) provides distinct advantages that cannot be achieved by either analyzer individually. In the Q/TOF, the quadrupole is used in one of two modes to select the ions to be examined, and the TOF analyzer measures the actual mass spectrum. Hexapole assemblies are also used to help collimate the ion beams. The hybrid orthogonal Q/TOF instrument is illustrated in Figure 23.1. 

A single instrument — a hybrid of a quadrupole and a TOF analyzer — can measure a full mass spectrum of ions produced in an ion source. If these are molecular ions, their relative molecular mass is obtained. Alternatively, precursor ions can be selected for MS/MS to give a fragment-ion spectrum characteristic of the precursor ions chosen, which gives structural information about the original molecule. 

All mass spectrometers analyze ions for their mass-to-charge ratios (m/z values) and simultaneously for the abundances of ions at any given m/z value. By separating the ions according to m/z and measuring the ion abundances, a mass spectrum is obtained. 

A multipoint ion collector (also called the detector) consists of a large number of miniature electron multiplier elements assembled, or constructed, side by side over a plane. A multipoint collector can be an array, which detects a dispersed beam of ions simultaneously over a range of m/z values and is frequently used with a sector-type mass spectrometer. Alternatively, a microchannel plate collector detects all ions of one m/z value. When combined with a TOP analyzer, the microchannel plate affords an almost instantaneous mass spectrum. Because of their construction and operation, microchannel plate detectors are cheaper to fit and maintain. Multipoint detectors are particularly useful for situations in which ionization occurs within a very short space of time, as with some ionization sources, or in which only trace quantities of any substance are available. For such fleeting availability of ions, only multipoint collectors can measure a whole spectrum or part of a spectrum satisfactorily in the short time available. 

Ions in a TOF analyzer are temporally separated according to mass. Thus, at the detector all ions of any one mass arrive at one particular time, and all ions of other masses arrive at a different times. Apart from measuring times of arrival, the TDC device must be able to measure the numbers of ions at any one m/z value to obtain ion abundances. Generally, in TOF instruments, many pulses of ions are sent to the detector per second. It is not unusual to record 30,000 spectra per minute. Of course, each spectmm contains few ions, and a final mass spectrum requires addition of all 30,000 spectra to obtain a representative result. 

A mass spectrum consists of peaks corresponding to ions. The position of a peak on the x-axis is proportional to its mass (strictly, its m/z value), while the height of the peak on the y-axis gives the number of ions (abundances) at a particular m/z. The ions giving rise to the spectrum are formed in an ion source and are passed through an analyzer for measurement of m/z and into a detector for measurement of abundance (Figure 32.1). 

Fourier transform ion cyclotron resonance (FTICR) analyzer is excellent for MSn measurements (see Section 2.2.6), perhaps even more so, since the ions remain in the cell after detection. In principle one injection of ions is enough for a whole MSn sequence, including acquisition of a mass spectrum of each step. 

Resolution (or resolving power) plays an important role in mass spectrometry for applications requiring the characterization of very similar chemical species. The ability to detect and accurately measure the m/z ratio of a particular ion depends directly on the resolving power of the mass analyzer. For example, if a sample contains two isobaric compounds (i.e., having the same nominal molecular mass but different elemental formulae) the difference in the exact masses of the molecular ions will be much less than 1 m/z unit. Any mass analyzer possessing a nominal resolving power (e.g., RP< 1000) will register only one peak in the mass spectrum of such a binary mixture. Attempts to measure the... 

The ion-trap mass spectrometer uses three electrodes to trap ions in a small volume. The mass analyzer consists of a ring electrode separating two hemispherical electrodes. A mass spectrum is obtained by changing the electrode voltages to eject the ions from the trap. The advantages of the ion-trap mass spectrometer include compact size and the ability to trap and accumulate ions thus increasing the signal-to-noise ratio of a measurement [534,535,551, 553]. 

The MC-ICP-MS consists of four main parts 1) a sample introduction system that inlets the sample into the instrument as either a liquid (most common), gas, or solid (e.g., laser ablation), 2) an inductively coupled Ar plasma in which the sample is evaporated, vaporized, atomized, and ionized, 3) an ion transfer mechanism (the mass spectrometer interface) that separates the atmospheric pressure of the plasma from the vacuum of the analyzer, and 4) a mass analyzer that deals with the ion kinetic energy spread and produces a mass spectrum with flat topped peaks suitable for isotope ratio measurements. 

Any mass spectrometer requires mass calibration before use. However, the procedures to perform it properly and the number of calibration points needed may largely differ between different types of mass analyzers. Typically, several peaks of well-known m/z values evenly distributed over the mass range of interest are necessary. These are supplied from a well-known mass calibration compound or mass reference compound. Calibration is then performed by recording a mass spectrum of the calibration compound and subsequent correlation of experimental m/z values to the mass reference list. Usually, this conversion of the mass reference list to a calibration is accomplished by the mass spectrometer s data system. Thereby, the mass spectrum is recalibrated by interpolation of the m/z scale between the assigned calibration peaks to obtain the best match. The mass calibration obtained may then be stored in a calibration file and used for future measurements without the presence of a calibration compound. This procedure is termed external mass calibration. 

Mass spectrometry is a sensitive analytical technique which is able to quantify known analytes and to identify unknown molecules at the picomoles or femto-moles level. A fundamental requirement is that atoms or molecules are ionized and analyzed as gas phase ions which are characterized by their mass (m) and charge (z). A mass spectrometer is an instrument which measures precisely the abundance of molecules which have been converted to ions. In a mass spectrum m/z is used as the dimensionless quantity that is an independent variable. There is still some ambiguity how the x-axis of the mass spectrum should be defined. Mass to charge ratio should not lo longer be used because the quantity measured is not the quotient of the ion s mass to its electric charge. Also, the use of the Thomson unit (Th) is considered obsolete [15, 16]. Typically, a mass spectrometer is formed by the following components (i) a sample introduction device (direct probe inlet, liquid interface), (ii) a source to produce ions, (iii) one or several mass analyzers, (iv) a detector to measure the abundance of ions, (v) a computerized system for data treatment (Fig. 1.1). 

Fig. 1.10 (A) Positive mode electrospray spectrum of human gamma interferon on a quadrupole mass analyzer. (B) Deconvoluted spectrum of human gamma interferon. The molecular mass was measured at 16908 2 Da.

In tandem MS mode, because the product ions are recorded with the same TOF mass analyzers as in full scan mode, the same high resolution and mass accuracy is obtained. Isolation of the precursor ion can be performed either at unit mass resolution or at 2-3 m/z units for multiply charged ions. Accurate mass measurements of the elemental composition of product ions greatly facilitate spectra interpretation and the main applications are peptide analysis and metabolite identification using electrospray iomzation [68]. In TOF mass analyzers accurate mass determination can be affected by various parameters such as (i) ion intensities, (ii) room temperature or (iii) detector dead time. Interestingly, the mass spectrum can be recalibrated post-acquisition using the mass of a known ion (lock mass). The lock mass can be a cluster ion in full scan mode or the residual precursor ion in the product ion mode. For LC-MS analysis a dual spray (LockSpray) source has been described, which allows the continuous introduction of a reference analyte into the mass spectrometer for improved accurate mass measurements [69]. The versatile precursor ion scan, another specific feature of the triple quadrupole, is maintained in the QqTOF instrument. However, in pre-... 

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