Structural information sources mass spectrometry

In contrast to IR and NMR spectroscopy, the principle of mass spectrometry (MS) is based on decomposition and reactions of organic molecules on theii way from the ion source to the detector. Consequently, structure-MS correlation is basically a matter of relating reactions to the signals in a mass spectrum. The chemical structure information contained in mass spectra is difficult to extract because of the complicated relationships between MS data and chemical structures. The aim of spectra evaluation can be either the identification of a compound or the interpretation of spectral data in order to elucidate the chemical structure [78-80],... 

Plasma torches and thermal ionization sources break down the substances into atoms and ionized atoms. Both are used for measurement of accurate isotope ratios. In the breakdown process, all structural information is lost, other than an identification of elements present (e.g., as in inductively coupled mass spectrometry, ICP/MS). 

The ionization techniques most widely used for LC-MS, however, are termed soft ionization in that they produce primarily molecular species with little fragmentation. It is unlikely that the molecular weight alone will allow a structural assignment to be made and it is therefore desirable to be able to generate structural information from such techniques. There are two ways in which this may be done, one of which, the so-called cone-voltage or in-source fragmentation, is associated specifically with the ionization techniques of electiospray and APCl and is discussed later in Section 4.7.4. The other, termed mass spectrometry-mass spectrometry (MS-MS) or tandem mass spectrometry, is applicable to all forms of ionization, provided that appropriate hardware is available, and is described here. 

MS-MS is a term that covers a number of techniques in which two stages of mass spectrometry are used to investigate the relationship between ions found in a mass spectrum. In particular, the product-ion scan is used to derive structural information from a molecular ion generated by a soft ionization technique such as electrospray and, as such, is an alternative to CVF. The advantage of the product-ion scan over CVF is that it allows a specific ion to be selected and its fragmentation to be studied in isolation, while CVF bring about the fragmentation of all species in the ion source and this may hinder interpretation of the data obtained. 

Principles and Characteristics Analytical multistage mass spectrometry (MSn) relies on the ability to activate and dissociate ions generated in the ion source in order to identify or obtain structural information about an unknown compound and to analyse mixtures by exploiting two or more mass-separating steps. A basic instrument for the currently most used form, tandem mass spectrometry (MS/MS), consists of a combination of two mass analysers with a reaction region between them. While a variety of instrument set-ups can be used in MS/MS, there is a single basic concept involved the measurement of the m/z of ions before and after a reaction in the mass spectrometer the reaction involves a change in mass and can be represented as ... 

In the case of a total unknown it is a case of the more data, the better. Solving this sort of problem is like doing a jigsaw puzzle. You piece together information from a variety of sources to come up with a feasible structure. You then test that structure with more experiments to ensure you get a consistent answer. As a minimum you should consider COSY, HSQC, HMBC, 1D 13C. Don t forget-NMR is not the only technique so look at mass spectrometry (accurate mass in particular) and IR to help. 

In soft ionization methods the excess energy deposited onto the ionized molecule is very small and stable even-electron ions are formed. This leads to easy determination of the molecular weight of the analyte, but as fragmentation is absent or it occurs to a very low extent, structural information is missing in the mass spectrum. However, one can obtain structural information by causing ion fragmentation out of the source by means of tandem mass spectrometry experiments (see below). 

Mass spectrometry provides detailed information regarding molecular weights and structures from extremely small quantities of materials. Several types of ionization sources can be employed for the on-line hyphenation of capillary electromigration techniques with MS, which include... 

B. SPENGLER, D. KIRSCH and R. KAUFMANN obtain structural information with reflectron TOF mass spectrometry (MALDI post-source decay) [66],... 

Tandem mass spectrometry allows more structural information to be obtained on a particular ionic species, because the used ionization method yields relatively few structurally diagnostic fragments, or because its fragmentation is obscured by the presence of other compounds in the mixture introduced in the source, or because it is obscured by other ions generated from the matrix in the course of ionization. 

The on-line coupling of CE with electrospray ionization mass spectrometry (CE-ESI-MS) allows high separation efficiency together with high sensitivity and selectivity as well as molecular structural information. A CE-UV-ESI-MS method was developed for the analysis of hoscyamine, scopolamine, and other tropane derivatives [131]. The differentiation of hyoscyamine from littorine, commonly encountered in plant material, was demonstrated using in-source collision-induced dissociation. The developed method was applied to the analysis of these alkaloids in Belladonna leaf extract and in Datura Candida x D. awreahairy root extract. Recently, CE coupled with electrochemiluminescence detection has been used for the determination of atropine and scopolamine in Flos daturae [132]. 

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