Buffer salts

Thermospray interface. Provides liquid chromatographic effluent continuously through a heated capillary vaporizer tube to the mass spectrometer. Solvent molecules evaporate away from the partially vaporized liquid, and analyte ions are transmitted to the mass spectrometer s ion optics. The ionization technique must be specified, e.g., preexisting ions, salt buffer, filament, or electrical discharge. 

Nonionic, hydrophilic Polyethylene oxide, polyethylene glycol Polyviny alcohol, hydroxyethyl cellulose, polyacrylamide Pure water 0.1-0.2 M salt/buffer, pH 7... 

Nonionic, hydrophobic Polyvinylpyrrolidone 0.1—3 M salt/buffer with 20% methanol... 

Anionic, hydrophilic Sodium polyacrylate, sodium hyaluronate, carboxymethyl cellulose 0.1-0.3 M salt/buffer, pH 7-9... 

Cationic, hydrophilic, and hydrophobic Chitosan, poly-2-vinyl pyridine 0.3-1.0 M salt/buffer, pH 2-7 with the addition of methanol for more hydrophobic polymers... 

An alternative way of eliminating water in the RPLC eluent is to introduce an SPE trapping column after the LC column (88, 99). After a post-column addition of water (to prevent breakthrough of the less retained compounds), the fraction that elutes from the RPLC column is trapped on to a short-column which is usually packed with polymeric sorbent. This system can use mobile phases containing salts, buffers or ion-pair reagents which can not be introduced directly into the GC unit. This system has been successfully applied, for example, to the analysis of polycyclic aromatic hydrocarbons (PAHs) in water samples (99). 

Many pitfalls await the unwary. Here is a short list, compiled from more detailed considerations by Bunnett.8 One should properly identify the reactants. In particular, does each retain its integrity in the reaction medium A spectroscopic measurement may answer this. The identities of the products cannot be assumed, and both a qualitative identification and a quantitative assay are in order. Pure materials are a must—reagents, salts, buffers, and solvent must be of top quality. Careful purification is always worth one s time, since much more is lost if all the work needs repeating. The avoidance of trace impurities is not always easy. If data are irreproducible, this possibility must be considered. Reactions run in the absence of oxygen (air) may be in order, even if the reactants and products are air-stable. Doing a duplicate experiment, using a spent reaction solution from the first run as the reaction medium, may tell whether the products have an effect or if some trace impurity that altered the rate has been expended. 

We have studied stoichiometry of complex formation between DNA and PLL and found that the complexes formed in low-salt-buffer solutions are of a 1 1 charge ratio [92]. The same 1 1 stoichiometry was found experimentally for DNA complexed with other synthetic polycations of different nature in low-salt aqueous solutions [such as poly (diallyldimethylammonium chloride), poly(dimethyhmino)ethylene(dimethylimino)ethy-lene-l,4-dimethylphenylmethyl ene dichloride, andpoly(4-vinyl-A-methylpyridinium bromide)] [93]. 

Solutions of Weak Acids Their Salts Buffer Changes in pH... 

The psubunit has been purified from PGl by ourselves and others and is a heat stable, acidic, heavily glycosylated protein with an apparent molecular mass of 37-39 kD (19, 26). No enzymatic activity has been identified for the protein. The psubunit can be extracted from the cell walls of both green and ripe tomato fruit by high salt buffers (13, 14, 18, 19, 20), and in the latter case is associated with PG2 polypeptide(s) in the form of PGl. Purified psubunit can also associate with and convert PG2 in vitro into an isoenzyme that closely resembles PGl (13, 14, 24). Biochemical studies have shown that in vivo and in vitro formation of PGl by the association of PG2 with the p-subunit alters the biochemical and enzymic properties of the associated catalytic PG2 polypeptide including its pH optima, response to cations and thermal stability (summarized in Table 1). This later property provides a convenient assay for the levels of PGl and PG2 in total cell wall protein extracts. 

A model of blending aqueous salt buffers for chromatography has been developed.1 The model assumed full miscibility, low mixing enthalpy and low volume change. It reproduced experimental S-curves of buffer strength produced by a Pharmacia P3500 dual piston system equipped with a model 24 V dynamic mixer with 0.6 mL internal volume as well as those produced by a BioSepra ProSys 4-piston system equipped with two dynamic mixers of 1.2 mL internal volume. 

Kaltenbrunner, O. and Jungbauer, A., Simple model for blending aqueous salt buffers. Application to preparative chromatography, /. Chromatogr. A, 769, 37, 1997. 

Sample preparation used to extract proteins from cells prior to analysis is an important step that can have an effect on the accuracy and reproducibility of the results. Proteins isolated from bacterial cells will have co-extracted contaminants such as lipids, polysaccharides, and nucleic acids. In addition various organic salts, buffers, detergents, surfactants, and preservatives may have been added to aid in protein extraction or to retain enzymatic or biological activity of the proteins. The presence of these extraneous materials can significantly impede or affect the reproducibility of analysis if they are not removed prior to analysis. 

Most eukaryotic mRNA molecules have up to 250 adenine bases at their 3 end. These poly (A) tails can be used in the affinity chromatographic purification of mRNA from a total cellular RNA extract. Under high salt conditions, poly (A) will hybridize to oligo-dT-cellulose or poly(U)-sepharose. These materials are polymers of 10 to 20 deoxythymidine or uridine nucleotides covalently bound to a carbohydrate support. They bind mRNA containing poly (A) tails as short as 20 residues. rRNA and tRNA do not possess poly (A) sequences and will not bind. After washing the mRNA can be eluted with a low salt buffer. 

Most CZE separations are very sensitive to conductivity (e.g., salt concentration) in the run buffer. Therefore, to avoid introducing a high amount of salt from the sample injection, samples should be buffer exchanged with an appropriate low salt buffer prior to analysis. Centrifugal UF/DF devices are ideal for this purpose, as they are typically very reproducible and allow the analyst greater flexibility in controlling the final sample concentration. 

Many cytosolic proteins are water soluble and their solubility is a function of the ionic strength and pH of the solution. The commonly used salt for this purpose is Ammonium Sulphate, due to its high solubility even at lower temperatures. Proteins in aqueous solutions are heavily hydrated, and with the addition of salt, the water molecules become more attracted to the salt than to the protein due to the higher charge. This competition for hydration is usually more favorable towards the salt, which leads to interaction between the proteins, resulting in aggregation and finally precipitation. The precipitate can then be collected by centrifugation and the protein pellet is re-dissolved in a low salt buffer. Since different proteins have distinct characteristics, it is often the case that they precipitate (or salt out ) at a particular concentration of salt. 

Three gradients of 0.0-0.5 M sodium chloride were run consecutively at 4°C in 0.05 M sodium acetate-acetic acid, 1 mM sodium azide, pH 5.25, followed by 0.05 M sodium acetate-acetic acid, 1 mM sodium azide, pH 3.5, and finally by 0.05 M sodium dihydrogen phosphate-disodium hydrogen phosphate (approx. 1 3), 1 mM sodium azide, pH 7.0. After sample application, the column was washed with the starting buffer to remove any non-bound compounds. Elution was continued with the high salt buffer. Fractions of 4 ml were collected and assayed for reactivity towards ninhydrin and for electric conductivity (salt concentration) after 75-fold dilution of a 100-pl aliquot. Ninhydrin-positive fractions were pooled for each peak, concentrated, and desalted by size exclusion chromatography (see above). 

For each test compound concentration, vehicle, negative or positive controls, make 8.25 mL of serum culture medium containing 70% rat serum, 30% sterile Tyrode s salt buffer with less than 1 mg/500 mL phenol red (free acid indicator) and 35 p,g/mL streptomycin sulfates. 

Nevertheless, the one-state model can be handled as a special case with either Aj = 0 or ki = k2. While, e.g. Upases show good stabilities in several organic reaction media [ 14], alcohol dehydrogenases are less stable, having half-lifetimes in microemulsions of only a few hours [34,103,104] or even only minutes [105]. The stability depends on the microemulsion composition and additionaUy on the components of the reaction mixture, like salts, buffers or impurities of the surfactant. 

Protein drugs have been formulated with excipients intended to stabilize the protein in the milieu of the pharmaceutical product. It has long been known that a variety of low molecular weight compounds have the effect of preserving the activity of proteins and enzymes in solution. These include simple salts, buffer salts and polyhydroxylated compounds such as glycerol, mannitol, sucrose and polyethylene glycols. Certain biocompatible polymers have also been applied for this purpose such as polysaccharides and synthetic polymers such as polyvinyl pyrrolidone and even nonionic surfactants. 

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