Hydrolases definition

Synonyms Glycerol ester hydrolase Triacetinase Triacyl glycerol lipase Tributyrase Tributyrinase Tributyrin esterase Triglyceride hydroiase Triglyceride lipase Triolein hydrolase Definition Digestive enzyme that hydrolyzes triglycerides... 

One of the most actively investigated aspects of the biohydrolysis of carboxylic acid esters is enantioselectivity (for a definition of the various stereochemical terms used here, see [7], particularly its Sect. 1.5) for two reasons, one practical (preparation of pure enantiomers for various applications) and one fundamental (investigations on the structure and function of hydrolases). The synthetic and preparative aspects of enantioselective biocatalysis by hydrolases have been extensively investigated for biotechnology applications but are of only secondary interest in our context (e.g., [16-18], see Sect. 7.3.5). In contrast, the fundamental aspects of enantioselectivity in particular and of structure-metabolism relationships in general are central to our approach and are illustrated here with a number of selected examples. 

Phosphatases are numerous and important enzymes (see also Chapt. 2). They are classified as phosphoric monoester hydrolases (phosphatases, EC 3.1.3), phosphoric diester hydrolases (phosphodiesterases, EC 3.1.4), triphosphoric monoester hydrolases (EC 3.1.5), diphosphoric monoester hydrolases (pyrophosphatases, EC 3.1.7), and phosphoric triester hydrolases (EC 3.1.8) [21] [63]. Most of these enzymes have a narrow substrate specificity restricted to endogenous compounds. However, some of these enzymes are active toward xenobiotic organophosphorus compounds, e.g., alkaline phosphatase (EC 3.1.3.1), acid phosphatase (EC 3.1.3.2), aryldialkylphosphatase (para-oxonase (PON1), EC 3.1.8.1) and diisopropyl-fluorophosphatase (tabunase, somanase, EC 3.1.8.2) [64 - 70]. However, such a classification is far from definitive and will evolve with further biochemical findings. Thus, a good correlation has been found in human blood samples between somanase and sarinase activities on the one hand, and paraoxonase (PON1) type Q isozyme concentrations on the other [71]. 

When H2O deacetylates the acyl-enzyme, phenylacetic acid is formed. When nucleophiles other than H2O deacylate the acyl-enzyme, a new condensation product, in this case phenylacetyl-O-R or phenylacetyl-NH-R is formed. By definition the hydrolysis of these condensation products can be catalyzed by the same enzyme that catalyzes their formation in equation 10.1. Thus, when the acyl-enzyme is formed from phenylacetyl-glycine or phenylacetyl-O-Me, this gives rise to an alternative process to produce Penicillin G, in addition to the thermodynamically controlled (= equilibrium controlled) condensation of phenylacetic acid and 6-aminopenicillanic acid (6-APA). This reaction that involves an activated side chain is a kinetically controlled (= rate controlled) process where the hydrolase acts as a transferase (Kasche, 1986 1989). 

In mouse liver and kidney and in rat liver, a-D-mannosidase activity appeared to be equally distributed between the two cytoplasmic-granule fractions. With mouse spleen and cancer tissue, a considerable proportion of the enzyme was found free in the cytoplasm. Rat spleen, on the other hand, lacked this cytoplasmic fraction. Inasmuch as the enzyme within the cytoplasmic granules was not fully active in a sucrose homogenate until the membranes had been disintegrated, a-D-mannosidase conforms to the definition of a lysosomal hydrolase. 

Epimerization of sugar, mechanisms 778 Epimers, definition of 163 Epinephrine (adrenaline) 542,553, 553s Episomes. See plasmid Epithelial cells 29 Epitheliocytes 25 Epoxides, alkyation by 254 Epoxide hydrolases 591 EPR (electron paramagnetic resonance) spectroscopy 398, 399 of glutamate mutase 873 in study of phosphotransferases 639 EPSP (enolpyruvoylshikimate-3-phosphate) 687s... 

Oxidation of two out of 13 tryptophan residues in a cellulase from Penicillium notatum resulted in a complete loss of enzymic activity (59). There was an interaction between cellobiose and tryptophan residues in the enzyme. Participation of histidine residues is also suspected in the catalytic mechanism since diazonium-l-H-tetrazole inactivated the enzyme. A xylanase from Trametes hirsuta was inactivated by N-bromosuc-cinimide and partially inactivated by N-acetylimidazole (60), indicating the possible involvement of tryptophan and tyrosine residues in the active site. As with many chemical modification experiments, it is not possible to state definitively that certain residues are involved in the active site since inactivation might be caused by conformational changes in the enzyme molecule produced by the change in properties of residues distant from the active site. However, from a summary of the available evidence it appears that, for many / -(l- 4) glycoside hydrolases, acidic and aromatic amino acid residues are involved in the catalytic site, probably at the active and binding sites, respectively. 

Pancreatic lipase can be considered a model for all other lipases. Most if not all of these enzymes seem to be nonspecific carboxyl ester hydrolases of the serine histidine type. Their specificity consists, by definition, in their ability to hydrolyze insoluble substrates, but apart... 

The definition of lipolytic enzymes as esterases that act at interfaces 26) can now be further specified. Lipolytic enzymes are hydrolases that have developed special lipophilic supersubstrate binding sites which enable them to align their reactive centers towards their substrates. 

Because of coupling (see Chapter 7) there are relationships between the thermodynamic properties of reactions in some of the EC classes. All oxidoreductase reactions can be considered to be coupled reactions because each one can be divided into two, or in a some cases, three half reactions that do not share atoms but are connected by formal electrons. Transferase reactions can each be considered to result from the coupling of two oxidoreductase reactions or two hydrolase reactions. Fifteen examples are discussed in reference (6). Each of the coupled reactions contributes its A, G ° and A, A h to the coupled reaction. Hydrolase reactions and isomerase reactions are never coupled reactions. Some lyase reactions are coupled. Ligase reactions are all coupled by definition because they join together two reactions with the hydrolysis of a pyrophosphate bond in ATP or a similar triphosphate. A spectacular example of coupling is provided by EC 6.3.5.4 because there are seven reactants. This never happens in chemistry. 

From early observations, De Duve defined lysosomes as cytoplasmic particles that were associated with a range of acid hydrolases (7). At the electron microscope level, membrane-bound vacuoles or compartments were recognized and shown to contain acid hydrolases that were detectable by C5dochemical staining (15). The definitive description of a lysosome (16) includes a membrane-bound organelle compartment that is acidic and... 

The phospholipases A, (PLAjS) comprise a large group of 1-acyl hydrolases, some of which also degrade neutral lipids (lipases) or remove the acyl group at position 2 in addition to that at position 1 (PLB), and thus must have lysophospholipase activity. Where the enzyme appears to show low selectivity for the sn-l or sn-2 position, the term phospholipase A is used. The term phospholipase B should be restricted to those enzymes where the mechanism involves minimal accumulation of lysophospholipid product. In this section, we consider various enzymes of the PLA type that do not fit a more precise definition in terms of acyl chain selectivity. 

The Report of the Commission on Enzymes of the International Union of Biochemistry (7) describes the systematic name of a lipase as a glycerol ester hydrolase and this definition will be used in the present review. It should be borne in mind, however, that this precise definition can afiFect the interpretation of much published work on lipases. ... 

Further definition of the hydrolyzed group, e.g., 3.2.1 glycoside hydrolases... 

The breakdown of triacylglycerol is catalysed by lipases. A large number of such enzymes have been purified from animals, plants and microbes (cf. Brockerhoff and Jensen, 1974). It should be noted that the term lipase is frequently misused. A true lipase is one which attacks triacylglycerols and acts only at an oil-water interface. This definition therefore excludes enzymes acting on water-soluble esters (esterases) or those preferentially hydrolysing other lipids (acyl hydrolases). 

This definition precludes enzymes acting on water-soluble esters (esterases) or those preferentially hydrolyzing other lipids (other acyl hydrolases). 

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