Fluorescent recovery after photobleaching

Fragata, M., Ohnishi, S., Asada, K., Ito, T. and Takahashi, M. (1984) Lateral diffusion of plastocyanin in multilamellar mixed-hpid bilayers studied by fluorescence recovery after photobleaching. Biochemistry, 23, 4044—4051. 

Tinland, B., Pernodet, N., and Weill, G., Field and pore size dependence of the electrophoretic mobility of DNA A combination of fluorescence recovery after photobleaching and electric birefringence measurements, Electrophoresis, 17, 1046, 1996. 

One of the most popular applications of molecular rotors is the quantitative determination of solvent viscosity (for some examples, see references [18, 23-27] and Sect. 5). Viscosity refers to a bulk property, but molecular rotors change their behavior under the influence of the solvent on the molecular scale. Most commonly, the diffusivity of a fluorophore is related to bulk viscosity through the Debye-Stokes-Einstein relationship where the diffusion constant D is inversely proportional to bulk viscosity rj. Established techniques such as fluorescent recovery after photobleaching (FRAP) and fluorescence anisotropy build on the diffusivity of a fluorophore. However, the relationship between diffusivity on a molecular scale and bulk viscosity is always an approximation, because it does not consider molecular-scale effects such as size differences between fluorophore and solvent, electrostatic interactions, hydrogen bond formation, or a possible anisotropy of the environment. Nonetheless, approaches exist to resolve this conflict between bulk viscosity and apparent microviscosity at the molecular scale. Forster and Hoffmann examined some triphenylamine dyes with TICT characteristics. These dyes are characterized by radiationless relaxation from the TICT state. Forster and Hoffmann found a power-law relationship between quantum yield and solvent viscosity both analytically and experimentally [28]. For a quantitative derivation of the power-law relationship, Forster and Hoffmann define the solvent s microfriction k by applying the Debye-Stokes-Einstein diffusion model (2)... 

Total internal reflection fluorescence (TIRF) microscopy, fluorescence in situ hybridization (FISH), fluorescence recovery after photobleaching (FRAP), fluorescence lifetime imaging microscopy (FLIM). 

To increase the speed of the TIRF-based kinetic techniques, the perturbation can be optical rather than chemical. If the evanescent wave intensity is briefly flashed brightly, then some of the fluorophores associated with the surface will be photobleached. Subsequent exchange with unbleached dissolved fluorophores in equilibrium with the surface will lead to a recovery of fluorescence, excited by a continuous but much attenuated evanescent wave. The time course of this recovery is a measure of the desorption kinetic rate k2. This technique1-115) is called TIR/FRAP (or TIR/FPR) in reference to fluorescence recovery after photobleaching (or fluorescence photobleaching recovery). 

E. H. Hellen and D. Axelrod, Kinetics of epidermal growth factor/receptor binding on cells measured by total internal reflection/fluorescence recovery after photobleaching, J. Fluor. 1, 113-128(1991). 

Lateral diffusion of phospholipids in model membranes at ambient pressure has been studied over the years by a variety of techniques including fluorescence recovery after photobleaching (FRAP), spin-label ESR, pulse field gradient NMR (PFG-NMR), quasielastic neutron scattering (QENS), excimer fluorescence and others.In general, the values reported for the lateral diffusion coefficient (D) range from 10 to 10 cm /s in the... 

Anders, J. J. and Woolery, S. (1992) Microbeam laser-injured neurons increase in vitro astrocytic gap junctional commnnication as measured by fluorescence recovery after photobleaching. Lasers Surg. Med. 12, 51-62. 

Fig. 2. Exchange of histones Hl.l and H2B from chromatin in interphase cells by analysis with fluorescence recovery after photobleaching (FRAP). Half of a nucleus of an SK-N cell expressing GFP-Hl.l was bleached (upper panel), and the recovery monitored over the times shown. Similarly, a region of a nucleus of an SK-N cell stably expressing H2B-CFP was bleached (lower panel), and the recovery monitored over the times shown. Whereas unbleached HI molecules move into the bleached region after a few minutes, the H2B histones are much less mobile, since the bleached region shows no recovery (from Ref [23]). Scale bar 5 pm.

Fig. 7. GFP-GR bound to the MMTV array was analyzed by fluorescence recovery after photobleaching (FRAP). The bleached region is indicated in the image of the pre-bleached nucleus (A). The pre-bleach array is shown in (B), the post-bleach image (C), and at 4.1 s (D) and 11.6 s (E) post-bleach. This analysis, along with Fluorescence Loss in Photobleaching (FLIP) experiments, show that GFP-GR undergoes rapid exchange with the array (from Ref. [58]). Scale bar 5 pm.

Looks at the role of caveolins in the formation of membrane caveolae Covers the investigation of hop diffusion of membrane lipids using FRAP (fluorescence recovery after photobleaching)... 

Determination of translational diffusion rates of proteins requires measurements at longer timescales, one-tenth of a second to several minutes. Eosin derivatives are also commonly used to measure translational diffusion coefficients using the Fluorescence Recovery After Photobleaching technique [138-141],... 

Fluorescence microphotolysis, or photobleaching, has been widely used to study translational mobility of lipids and proteins in membranes. An attenuated laser beam may be focused down to the diameter of a cell or less. Then the intensity can be suddenly increased by several orders of magnitude, bleaching any fluorescent material present. The return of fluorescent material by free diffusion from a neighboring region (fluorescence recovery after photobleaching) or by diffusion through a membrane into a cell can then be... 

The velocity of interstitial fluid in solid tumors is often lower than the resolution of experimental techniques, which is 0. lpm/sec, except in some special tumor models. For example, Chary and Jain (1989) have examined interstitial fluid velocity in granulation tissues and VX2 mammary carcinoma grown in rabbit ear chambers, using the fluorescence recovery after photobleaching (FRAP) technique. The average velocities in both tissues are about 0.6 pm/sec. 

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