The Microenvironment

Orlova et al. (2003) theoretically studied the mechanism of the firefly bioluminescence reaction on the basis of the hybrid density functional theory. According to their conclusion, changes in the color of light emission by rotating the two rings on the 2-2 axis is unlikely, whereas the participation of the enol-forms of oxyluciferin in bioluminescence is plausible but not essential to explain the multicolor emission. They predicted that the color of the bioluminescence depends on the polarization of the oxyluciferin molecule (at its OH and O-termini) in the microenvironment of the luciferase active site the... 

A merocyanine dye, l-ethyl-4-(2-(4-hydroxyphenyl)ethenyl)pyridinium bromide (M-Mc, 2), exhibits a large spectral change according to the acid-base equilibrium [40, 41]. The equilibrium is affected by the local electrostatic potential and the polarity of the microenvironment around the dye. Hence, this dye is useful as a sensitive optical probe for the interfacial potential and polarity when it is covalently attached to the polyelectrolyte backbone. 

In a more general application, thermoluminescence is used to study mechanisms of defect annealing in crystals. Electron holes and traps, crystal defects, and color-centers are generated in crystals by isotope or X-ray irradiation at low temperatures. Thermoluminescent emission during the warmup can be interpreted in terms of the microenvironments around the various radiation induced defects and the dynamics of the annealing process (117-118). ... 

Thus, In the microenvironment, calibration standards have different requirements than standards that are used to relate the Instrument signal to compound concentration. Standards used to calibrate the response of a mlcrospectrofluorometer for day-to-day or Instrument-to-lnstrument comparisons must not photobleach. Conversely, a standard used to quantify the concentration of an analyte In a sample must photobleach In a manner Identical to that of the sample. 

Size and Shape. The dimensions of the standard are more critical In the microenvironment than In the macroenvironment, since microscopic measurements commonly require changes In field apertures and magnification. If a microscopic standard has a small (/im-slzed), well-defined shape, such as a sphere or cylinder, an accurate Intensity/ volume relationship can be established, which should be Independent of the microscope optics. Standardization Is thus valid no matter what microscope parameters are employed, as long as the spectral characteristics of the standard and the sample are quite similar or Identical. 

The microenvironment in water-containing AOT-reversed micelles has a marked effect on the spectral properties of flnorescein. The absorption peaks are red-shifted by about 10 nm from the corresponding positions in aqueous solution, the absorption extinction coefficient increases with R, and the fluorescence is more effectively quenched in AOT-reversed micelles than in aqueous solution [149],... 

Osteoclasts are multinucleated cells derived from pluripotent hematopoietic stem cells. Osteoclasts possess an apical membrane domain, exhibiting a ruffled border that plays a key role in bone resorption (Figure 48-12). A proton-translocating ATPase expels protons across the ruffled border into the resorption area, which is the microenvironment of low pH shown in the figure. This lowers the local pH to 4.0 or less, thus increasing the solubility of hydroxyapatite and allowing demineralization to occur. Lysosomal acid proteases are released that digest the now accessible matrix proteins. 

Dendritic hosts can be used in aqueous solution to encapsulate water-soluble fluorescent probes. Changes in the photophysical properties of these encapsulated probes are useful to understand the properties of the microenvironment created by the dendritic interior. For example, adamantyl-terminated poly(pro-pylene amine) dendrimers from the first to the fifth generation (36 represents the third generation) can be dissolved in water at pH<7 in the presence of -cyclodextrin because of encapsulation of the hydrophobic adamantyl residue inside the /1-cyclodextrin cavity and the presence of protonated tertiary amine units inside the dendrimer [72]. Under these experimental conditions, 8-anifi-... 

Epidemiologic studies of the macroenvironment focused on the diet and the long incubation period have led us to postulate that long-lasting disturbances in the normal gastric mucosa may determine the final outcome of the neoplastic transformation W. This explains the present interest in precursor lesions rather than in cancer itself. We, therefore, need to scrutinize the gastric microenvironment and attempt to point out the components that may be relevant to neoplasia. The microenvironment could be considered to be determined by three basic elements ... 

Rotational dynamics of a fluorescent dye adsorbed at the interface provides useful information concerning the rigidity of the microenvironment of liquid-liquid interfaee in terms of the interfacial viscosity. The rotational relaxation time of the rhodamine B dye was studied by time-resolved total internal reflection fluorescent anisotropy. In-plane... 

Reactive intermediates in solution and in the gas phase tend to be indiscriminant and ineffective for synthetic applications, which require highly selective processes. As reaction rates are often limited by bimolecular diffusion and conformational motion, it is not surprising that most strategies to control and exploit their reactivity are based on structural modihcations that influence their conformational equilibrium, or by taking advantage of the microenvironment where their formation and reactions take place, including molecular crystals. ... 

The dielectric constant of the solvent in the microenvironment of the polymer chain has been shown to be different from that in the bulk solvent (19). This change in dielectric constant might enhance the nucleophilicity of the pyridine ring and therefore increase the rate of quaternization. The kinetic results are consistent with the observations of Overberger et al., (20), who showed that increased hydrophobic nature of the substrate led to faster reaction rates in nucleophilic catalysis. In the present case one would expect the butadiene copolymer to be more hydrophobic than the methylvinylether copolymer. An alternative synthesis of supernucleophilic polymers has been achieved using the following reaction sequence. 

Solvatochromic probes have been used for a variety of applications like the study polarity of pure and mixed solvents [99], and the retention behavior in reverse-phase liquid chromatography [100] among other applications. Frechet et al. used 4-(N-methylamino)-l-nitrobenzene (p-MANB), as the chromophore, to probe the microenvironment of polyaromatic ether based dendrimers [101]. 

Fluorescence probes possessing the PyU base 46 selectively emit fluorescence only when the complementary base is adenine. In this case, the chromophore of is extruded to the outside of the duplex because of Watson-Crick base pair formation, and exposed to a highly polar aqueous phase. On the contrary, the duplex containing a PyU/N (N = G, C and T) mismatched base pair shows a structure in which the glycosyl bond of uridine is rotated to the syn conformation. In this conformation, the fluorophore is located at a hydrophobic site of the duplex. The control of base-specific fluorescence emission is based on the polarity change in the microenvironment where the fluorophore locates are dependent on the l>yU/A base-pair formation. 

Mechanical and chemical methods for qualitative and quantitative measurement of polymer structure, properties, and their respective processes during interrelation with their environment on a microscopic scale exist. Bosch et al. [83] briefly discuss these techniques and point out that most conventional techniques are destructive because they require sampling, may lack accuracy, and are generally not suited for in situ testing. However, the process of polymerization, that is, the creation of a rigid structure from the initial viscous fluid, is associated with changes in the microenvironment on a molecular scale and can be observed with free-volume probes [83, 84]. 

H jj is the energy of the molecules of the microenvironment (this term does not depend on the embedded electron density and is not involved in the construction of the Fock matrix). 

Several metallophthalocyanines have been reported to be active toward the electroreduction of C02 in aqueous electrolyte especially when immobilized on an electrode surface.125-127 CoPc and, to a lesser extent, NiPc appear to be the most active phthalocyanine complexes in this respect. Several techniques have been used for their immobilization.128,129 In a typical experiment, controlled potential electrolysis conducted with such modified electrodes at —1.0 vs. SCE (pH 5) leads to CO as the major reduction product (rj = 60%) besides H2, although another study indicates that HCOO is mainly obtained.129 It has been more recently shown that the reduction selectivity is improved when the CoPc is incorporated in a polyvinyl pyridine membrane (ratio of CO to H2 around 6 at pH 5). This was ascribed to the nature of the membrane which is coordinative and weakly basic. The microenvironment around CoPc provided by partially protonated pyridine species was suggested to be important.130,131 The mechanism of C02 reduction on CoPc is thought to involve the initial formation of a hydride derivative followed by its reduction associated with the insertion of C02.128... 

A closer look at the data shows the lifetime distributions are comparatively broad, about 0.25 ns for both distributions. This is in fact much broader than what one would expect from photon statistics alone. Based on realistic / -values (1.2-1.5) lifetime images recorded with this many counts are expected to yield distributions with widths on the order of 0.1 ns. The broadening is therefore not because of photon statistics. Variations in the microenvironment of the GFP are the most likely source of the lifetime heterogeneities. Importantly, such sensitivity for local microenvironment may be the source of apparent FRET signals. In this particular FRET-FLIM experiment, we found that the presence of CTB itself without the acceptor dye already introduced a noticeable shift of the donor lifetime. Therefore, in this experiment the donor-only lifetime image was recorded after unlabeled CTB was added to the cells. The low FRET efficiency and broadened lifetime distribution call for careful control experiments and repeatability checks. 

Figure 7. Schematic representation of the microenvironment of the cationic PSD diOC16(3) in a potassium sensor before (A) and after (B) extraction of potassium from the aqueous into the lipophilic membrane phase. The sensor membrane is composed of valinomycin, diOC16(3) and a lipophilic borate salt dissolved in plasticized PVC.

Initial efforts gave rise to well-characterized dendritic macromolecules, but applications remained limited because of the lack of specific functionalities. An exponential increase of publication volume observed for about 15 years testified the growing interest for dendrimers and has led to versatile and powerful iterative methodologies for systematically and expeditiously accessing complex dendritic structures. The perfect control of tridimensional parameters (size, shape, geometry) and the covalent introduction of functionalities in the core, the branches, or the high number extremities, or by physical encapsulation in the microenvironment created by cavities confer such desired properties as solubility, and hydrophilic/hydrophobic balance. Thus, creativity has allowed these structures to become integrated with nearly all contemporary scientific disciplines. 

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