Pharmaceutical synthetic analysis

The evolution of molecular graphics (7) is described in an earlier ACS Symposium Series book (77) which acts as an interesting precursor to this present volume. Chemical reaction systems such as LHASA (Logic and Heuristics Applied to Synthetic Analysis) 18) and SECS (Simulation and Evaluation of Chemical Synthesis) (79) had long used graphics but it was some time before the first in-house, proprietary system appeared, attracting much interest in the chemical and pharmaceutical industries. This was Upjohn s Compound Information System, COUSIN 20-21). 

However, compared with the traditional analytical methods, the adoption of chromatographic methods represented a signihcant improvement in pharmaceutical analysis. This was because chromatographic methods had the advantages of method specihcity, the ability to separate and detect low-level impurities. Specihcity is especially important for methods intended for early-phase drug development when the chemical and physical properties of the active pharmaceutical ingredient (API) are not fully understood and the synthetic processes are not fully developed. Therefore the assurance of safety in clinical trials of an API relies heavily on the ability of analytical methods to detect and quantitate unknown impurities that may pose safety concerns. This task was not easily performed or simply could not be carried out by classic wet chemistry methods. Therefore, slowly, HPLC and GC established their places as the mainstream analytical methods in pharmaceutical analysis. 

Major applications of modern TLC comprise various sample types biomedical, pharmaceutical, forensic, clinical, biological, environmental and industrial (product uniformity, impurity determination, surfactants, synthetic dyes) the technique is also frequently used in food science (some 10% of published papers) [446], Although polymer/additive analysis takes up a small share, it is apparent from deformulation schemes presented in Chapter 2 that (HP)TLC plays an appreciable role in industrial problem solving even though this is not reflected in a flood of scientific papers. TLC is not only useful for polymer additive extracts but in particular for direct separations based on dissolutions. 

Modern spectroscopy plays an important role in pharmaceutical analysis. Historically, spectroscopic techniques such as infrared (IR), nuclear magnetic resonance (NMR), and mass spectrometry (MS) were used primarily for characterization of drug substances and structure elucidation of synthetic impurities and degradation products. Because of the limitation in specificity (spectral and chemical interference) and sensitivity, spectroscopy alone has assumed a much less important role than chromatographic techniques in quantitative analytical applications. However, spectroscopy offers the significant advantages of simple sample preparation and expeditious operation. 

D Acquarica, L, New synthetic strategies for the preparation of novel chiral stationary phases for HPLC containing natural pool selectors, presented at 8 Int. Meeting on Recent Developments in Pharmaceutical Analysis, Roma, June 29-July 3, 1999, 37. 

Different classifications for the chiral CSPs have been described. They are based on the chemical structure of the chiral selectors and on the chiral recognition mechanism involved. In this chapter we will use a classification based mainly on the chemical structure of the selectors. The selectors are classified in three groups (i) CSPs with low-molecular-weight selectors, such as Pirkle type CSPs, ionic and ligand exchange CSPs, (ii) CSPs with macrocyclic selectors, such as CDs, crown-ethers and macrocyclic antibiotics, and (iii) CSPs with macromolecular selectors, such as polysaccharides, synthetic polymers, molecular imprinted polymers and proteins. These different types of CSPs, frequently used for the analysis of chiral pharmaceuticals, are discussed in more detail later. 

The use of capillary electrophoresis (CE) during the synthetic drug development is described from the preclinical development phase to the final marketed stage. The chapter comprises the determination of physicochemical properties, such as acid—base dissociation constants (pKJ, octanol—water distribution coefficients (logP), and analysis of pharmaceutical counterions and functional excipients. 

In an overview on CE for pharmaceutical applications, Altria describes the analysis of ionic salts, organic acids, and also water purity, which may have deleterious effects on synthetic processes. In her review, Natishan " also included indirect UV detection when performing pharmacokinetic studies. 

Results comparable to those shown in Figure 1 can readily be achieved with most crude mixtures containing synthetic or naturally occurring peptides, using similar RPC strategies. The resolution of synthetic peptides prepared by solid- or solution-phase chemical methods is now so routine by analytical and preparative RPC methods that an April 2000 CD-ROM database search of relevant scientific journals revealed that over 2500 publications arise each year on the use of RPC for the purification or analysis of peptides as part of the scientific literature related to peptide chemistry and its application in various fields of the biomedical or biological science and in biotechnological applications related to the food, environmental, and pharmaceutical industries. 

The criticisms in the previous paragraphs lead to a question If Hansch analysis is of such questionable value, then why has an entire chapter of this textbook been devoted to the subject Despite the fading utility of classical QSAR methods such as Hansch analysis, the logic behind Hansch analysis is invaluable to medicinal chemistry. Synthetic chemists in the pharmaceutical industry intuitively consider the ideas used to construct Hansch equations. Ideas such as electronics, sterics, and lipophilicity underlie traditional SAR approaches in the laboratory. Critical analysis of activity data and emphasis on seeking holes in R-group selection are also fundamental to successful SAR on a lead. Through the study of Hansch analysis, all these crucial ideas are presented in a rational framework that helps demonstrate their relevance. Just as importantly, Hansch analysis provides the foundation for the next generation of QSAR comparative molecular field analysis. 

Comparative molecular field analysis (CoMFA) is a modern, powerful extension of the classical QSAR methods that were developed in the 1960s.14 While Hansch analysis is simple to understand and fairly easy for any medicinal chemist to perform, CoMFA requires specialized software and an understanding of statistics. Since CoMFA is outside the experience of most synthetic chemists, pharmaceutical companies have dedicated computational chemistry groups to handle advanced QSAR tasks. 

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