Peptides neutral

The teicoplanin CSP (Chirobiotic T) exhibits enantioselectivity for underivatized and Mderivatized (FMOC or Z) amino acids, hydroxy carboxylic acids and other chiral acids including chiral phenols, small peptides, neutral aromatic analytes and cyclic aromatic and aliphatic amines [285] (see also Table 9.11). Selection of the mobile phase mcxle (reversed-phase, normal-phase, or polar-organic phase mode) follows the same criteria as described for vancomycin CSP. 

Table 2.1. The tendency of coded amino acids for a-helix-promotinglbreaking and (3-structure promotinglbreaking, when part of a peptide (neutral= 0.8-1.00=no tendency either way)a... 

Q. Zhang, V. A. Petyuk, A. A. Schepmoes, D. J. Orton, M. E. Monroe, F. Yang, R. D. Smith, and T. O. Metz, Analysis of non-enzymatically glycated peptides Neutral-loss-triggered MS versus multi-stage activation tandem mass spectrometry, Rapid Commun. Mass Spectrom., 22 (2008) 3027-3034. 

To illustrate the specific operations involved, the scheme below shows the first steps and the final detachment reaction of a peptide synthesis starting from the carboxyl terminal. N-Boc-glycine is attached to chloromethylated styrene-divinylbenzene copolymer resin. This polymer swells in organic solvents but is completely insoluble. ) Treatment with HCl in acetic acid removes the fert-butoxycarbonyl (Boc) group as isobutene and carbon dioxide. The resulting amine hydrochloride is neutralized with triethylamine in DMF. 

Another protecting group of amines is 1-isopropylallyloxycarbonyl, which can be deprotected by decarboxylation and a /3-elimination reaction of the (tt-l-isopropylallyl)palladium intermediate under neutral conditions, generating CO2 and 4-methyl-1,3-pentadiene. The method can be applied to the amino acid 674 and peptides without racemization[437]. 

The enzymatic hydrolysates of milk casein and soy protein sometimes have a strong bitter taste. The bitter taste is frequently developed by pepsin [9001 -75-6] chymotrypsin [9004-07-3] and some neutral proteases and accounted for by the existence of peptides that have a hydrophobic amino acid in the carboxyhc terminal (226). The relation between bitter taste and amino acid constitution has been discussed (227). 

Properties and Structure. a -Acid glycoprotein (a -AGP) has a molecular mass of about 41,000 and consists of a peptide chain having 181 amino acid residues and five carbohydrate units (14,15). Two cystine disulfide cross-linkages connect residues 5 and 147 and residues 72 and 164. The carbohydrate units comprise 45% of the molecule and contain siaUc acid, hexosamine, and neutral hexoses. In phosphate buffer the isoelectric point of the... 

MacrotetroHdes of the valinomycin group of electrically neutral antibiotics form stable 1 1 complexes with alkaH metal ions that increase the cation permeabiHty of some biological and artificial lipophilic membranes. This solubiHzation process appears to have implications in membrane transport research (30) (see Antibiotics, peptides). 

Thiazolidines have been prepared from /3-aminothiols—for example, cysteine—to protect the —SH and — NH groups during syntheses of peptides, including glu-tathione. Thiazolidines are oxidized to symmetrical disulfides with iodine they do not react with thiocyanogen in a neutral solution. 

The neutral hydrophilic surface and the wide range of pore diameters available for SynChropak GPC allow many compounds from small peptides to nucleic acids and other polymers to be analyzed. Table 10.2 lists the approximate exclusion limits for both linear and globular solutes. Although this information... 

Why should the cores of most globular and membrane proteins consist almost entirely of a-helices and /3-sheets The reason is that the highly polar N—H and C=0 moieties of the peptide backbone must be neutralized in the hydrophobic core of the protein. The extensively H-bonded nature of a-helices and /3-sheets is ideal for this purpose, and these structures effectively stabilize the polar groups of the peptide backbone in the protein core. 

Mammals, fungi, and higher plants produce a family of proteolytic enzymes known as aspartic proteases. These enzymes are active at acidic (or sometimes neutral) pH, and each possesses two aspartic acid residues at the active site. Aspartic proteases carry out a variety of functions (Table 16.3), including digestion pepsin and ehymosin), lysosomal protein degradation eathepsin D and E), and regulation of blood pressure renin is an aspartic protease involved in the production of an otensin, a hormone that stimulates smooth muscle contraction and reduces excretion of salts and fluid). The aspartic proteases display a variety of substrate specificities, but normally they are most active in the cleavage of peptide bonds between two hydrophobic amino acid residues. The preferred substrates of pepsin, for example, contain aromatic residues on both sides of the peptide bond to be cleaved. 

Catalytic hydrogenolysis of an O-benzyl protective group is a mild, selective method introduced by Bergmann and Zervas to cleave a benzyl carbamate (>NC0-0CH2C6H5 —> >NH) prepared to protect an amino group during peptide syntheses. The method has also been used to cleave alkyl benzyl ethers, stable compounds prepared to protect alkyl alcohols benzyl esters are cleaved by catalytic hydrogenolysis under neutral conditions. 

A complete set of intermolecular potential functions has been developed for use in computer simulations of proteins in their native environment. Parameters have been reported for 25 peptide residues as well as the common neutral and charged terminal groups. The potential functions have the simple Coulomb plus Lennard-Jones form and are compatible with the widely used models for water, TIP4P, TIP3P and SPC. The parameters were obtained and tested primarily in conjunction with Monte Carlo statistical mechanics simulations of 36 pure organic liquids and numerous aqueous solutions of organic ions representative of subunits in the side chains and backbones of proteins... 

Proteins are large biomolecules made up of a-amino acid residues linked together by amide, or peptide, bonds. Chains with fewer than 50 amino acids are often called peptides, while the term protein is reserved for larger chains. Twenty amino acids are commonly found in proteins all are a-amino acids, and all except glycine have stereochemistry similar to that of l sugars. In neutral solution, amino acids exist as dipolar zwitterions. 

It is generally believed that the absorption (and fluorescence excitation) peak at about 400 nm is caused by the neutral form of the chro-mophore, 5-(p-hydroxybenzylidene)imidazolin-4-one, and the one in the 450-500 nm region by the phenol anion of the chromophore that can resonate with the quinoid form, as shown below (R1 and R2 represent peptide chains). However, the emission of light takes place always from the excited anionic form, even if the excitation is done with the neutral form chromophore. This must be due to the protein environment that facilitates the ionization of the phenol group of the chromophore. This is also consistent with the fact that the pACa values of phenols in excited state are in an acidic range, between 3 and 5 (Becker, 1969), thus favoring anionic forms at neutral pH. 

Because renal vasodilatation and hyperfiltration are often associated with a natriuretic response, a number of activators or inhibitors of endogenous vasoactive systems can cause increased NaCl excretion, and some of these may be developed into compounds of clinical interest in special situations. Such agents include natriuretic pqDtides most notably B-type natriuretic peptide (nesiritide), neutral endopeptidase (NEP) inhibitors (thiorphan, phosphoramidon), mixed NEP and ACE inhibitors (omapatrilat), guanylin and uroguanylin, kinins, prostaglandins of the E series, adrenomedullin, relaxin, prolactin, and others. 

ET-1 from big-ET-1 by other proteases such as neutral endopeptidase or other currently unidentified proteases. Therefore, dual inhibition of ECE and NEP might inhibit ET-l generation more efficiently, than that seen for selective ECE inhibitors. However, dual inhibiton of ECE and NEP could also increase the risk for the development of AD, as both enzyme classes are involved in the degradation of A 3 peptide. 

Fig. 37. Dependence of the thermodynamic parameters AH and AS of triple-helix formation on the imino acid content of the peptides (obtained by cleavage of calf skin-type I collagene with cyanogene and subequent isolation by column chromatrography)3) and of the native neutral salt-soluble skin collagene of various animals. The entropy values are denoted by dotted lines...

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