Phenylalanine-cinnamic acid pathway

The conversion of phenylalanine to a C-6—C-1 unit must include a process for the loss of two earbon atoms of the aromatic side chain as well as the introduction of oxygen in the aromatic ring. From previous biochemical studies two possible pathways seemed feasible for degradation to a C-6—C-1 unit (a) phenylalanine->phenylserine->benzalde-hyde- protocatechuic aldehyde, or (6) phenylalanine- cinnamic acid- -caffeic acid->protocatechuic aldehyde. The negligible incorporation of benzaldehyde and phenylserine compared with protocatechuic aldehyde... 

Most of the biogenetic proposals for the elaboration of the A ring involved the use of phenylalanine or its biochemical equivalent, dl-Phenylalanine-3-i4C was fed (58) as a means of determining which of these possibilities was closer to the true situation. The colchicine activity from this experiment was found almost entirely at C-5, an observation which negates the first two schemes illustrated in Section VII, A. DL-Phenylalanine-2-i4C (59, 62, 64) and DL-phenylalanine-l- C (62, 64) were found to label specifically carbon atoms 6 and 7, respectively. Sodium cinnamate-2- and 3- C were also incorporated (62, 64, 65) specifically into carbons 6 and 5, respectively. The firm conclusion can be reached that the phenylalanine-cinnamic acid pathway is used in the elaboration of ring A and carbon atoms C-5, C-6, and C-7. Similar results were found with demecolcine (6, 59). L-Methionine-i CHa (6, 61) and other C-1 donors (see Table VI), as expected, were excellent sources of the (9-methyl groups. 

The precursors of flavonoid biosynthesis include shikimic acid, phenylalanine, cinnamic acid, and p-coumaric acid. Shikimic acid acts as an intermediate in the biosynthesis of aromatic acid. The basic pathways to the core isoflavonoid skeletons have been established both enzymatically and genetically [16]. The synthesis of isoflavones can be broadly divided into three main synthetic pathways the formylation of deoxybenzoins, the oxidative rearrangement of chalcones and flavanones, and the arylation of a preformed chromanone ring. In leguminous plants, the major isoflavonoids are produced via two branches of the isoflavonoid biosynthetic pathway, and the different branches share a majority of common reactions [1]. Unlike the common flavonoid compotmds, which have a 2-phenyl-benzopyrone core structure, isoflavones, such as daidzein and genistein, are 3-phenyl-benzopyrone compounds. Biochemically, the synthesis of isoflavones is an offshoot of the flavonoids biosynthesis pathway. Several attempts have aimed to increase... 

The earliest references to cinnamic acid, cinnamaldehyde, and cinnamyl alcohol are associated with thek isolation and identification as odor-producing constituents in a variety of botanical extracts. It is now generally accepted that the aromatic amino acid L-phenylalanine [63-91-2] a primary end product of the Shikimic Acid Pathway, is the precursor for the biosynthesis of these phenylpropanoids in higher plants (1,2). 

The key reaction that links primary and secondary metabolism is provided by the enzyme phenylalanine ammonia lyase (PAL) which catalyzes the deamination of l-phenylalanine to form iran.v-cinnamic acid with the release of NH3 (see Fig. 3.3). Tyrosine is similarly deaminated by tyrosine ammonia lyase (TAL) to produce 4-hydroxycinnamic acid and NH3. The released NH3 is probably fixed by the glutamine synthetase reaction. These deaminations initiate the main phenylpropanoid pathway. 

Phenylalanine Ammonia-Lyase. The building units of lignin are formed from carbohydrate via the shikimic acid pathway to give aromatic amino acids. Once the aromatic amino acids are formed, a key enzyme for the control of lignin precursor synthesis is phenylalanine ammonia-lyase (PAL) (1). This enzyme catalyzes the production of cinnamic acid from phenylalanine. It is very active in those tissues of the plant that become lignified and it is also a central enzyme for the production of other phenylpropanoid-derived compounds such as flavonoids and coumarins, which can occur in many parts of the plant and in many different organs (35). Radioactive phenylalanine and cinnamic acid are directly incorporated into lignin in vascular tissue (36). 

Aromatic compounds arise in several ways. The major mute utilized by autotrophic organisms for synthesis of the aromatic amino acids, quinones, and tocopherols is the shikimate pathway. As outlined here, it starts with the glycolysis intermediate phosphoenolpyruvate (PEP) and erythrose 4-phosphate, a metabolite from the pentose phosphate pathway. Phenylalanine, tyrosine, and tryptophan are not only used for protein synthesis but are converted into a broad range of hormones, chromophores, alkaloids, and structural materials. In plants phenylalanine is deaminated to cinnamate which yields hundreds of secondary products. In another pathway ribose 5-phosphate is converted to pyrimidine and purine nucleotides and also to flavins, folates, molybdopterin, and many other pterin derivatives. 

The general phenylpropanoid pathway begins with the deamination of L-phenylalanine to cinnamic acid catalyzed by phenylalanine ammonia lyase (PAL), Fig. (1), the branch-point enzyme between primary (shikimate pathway) and secondary (phenylpropanoid) metabolism [5-7]. Due to the position of PAL at the entry point of phenylpropanoid metabolism, this enzyme has the potential to play a regulatory role in phenolic-compound production. The importance of this is illustrated by the high degree of regulation both during development as well as in response to environmental stimuli. 

Figure 3-4. The general phenylpropanoid pathway. The enzymes involved in this pathway are (a) phenylalanine ammonia lyase (PAL E.C. 4.3.1.5), (b) cinnamic acid 4-hydroxylase (C4H E.C. 1.14.13.11), and (J) 4-coumaric acid CoA ligase (4CL E.C. 6.2.1.12). (a) depicts tyrosine ammonia lyase activity in PAL of graminaceous species. The grey structures in the box represent an older version of the phenylpropanoid pathway in which the ring substitution reactions were thought to occur at the level of the hydroxycinnamic acids and/or hydroxycinnamoyl esters. The enzymes involved in these conversions are (c) coumarate 3-hydroxylase (C3H E.C. 1.14.14.1), (d) caffeate O-methyltransferase (COMT EC 2.1.1.68), (e) ferulate 5-hydroxylase (F5H EC 1.14.13), and (g) caffeoyl-CoA O-methyltransferase (CCoA-OMT EC 2.1.1.104). These enzymes are discussed in more detail in Section 10.

The biosynthesis of gallic acid (3.47) has been under investigation for more than 50 years. Different biosynthetic routes have been proposed, as depicted in Figure 3-6 (/) direct biosynthesis from an intermediate of the shikimate pathway, (2) biosynthesis via phenylalanine (3.27), cinnamic acid (3.29), />coumaric acid (3.30), caffeic acid (3.32), and 3,4, 5-trihydroxycinnamic acid (3.44), or (3) biosynthesis via caffeic acid (3.32) and protocatechuic acid (3.45). The possibility that different pathways co-existed in different species or even within one species was also considered. 

The biosynthetic pathway for salicylic acid is not clear. At present, at least two pathways have been proposed. Each branches from phenyl-propanoid biosynthesis after phenylalanine has been converted to trans-cinnamic acid by phenylalanine ammonium lyase (PAL). In one scheme (Pathway 1 Fig. 4), tram-cinnamic acid would be converted to 2-hydroxy cinnamic acid (or 2-coumaric acid) by a cinnamate 2-hydroxylase. This compound could then be converted to salicylic acid via -oxidation possibly through an acetyl coenzyme A (CoA) intermediate. Alternatively, tram-cinnamic acid could be oxidized to benzoic acid and then hydrox-ylated via a postulated o-hydroxylase activity. The details of this pathway, particularly in tobacco and cucumber, deserve further study. 

In either of the proposed pathways, salicylic acid is synthesised from tram-cinnamic acid. This is an intriguing observation and may provide a clue as to how and why the induction of SAR is tightly linked to the formation of a necrotic lesion. When plants react hypersensitively to pathogen attack, many biochemical changes occur, including the induction of phenylpropanoid biosynthesis. In bean, as well as other plants, this induction seems to be at least partly caused by an increase in the synthesis of phenylalanine ammonium lyase and other enzymes involved in the biosynthesis of isoflavonoid phytoalexins, flavonoid pigments and... 

The enc cluster contains four genes (encH, encl, encJ, encP) involved in the biosynthesis of the unusual benzoyl-CoA (185) starter from phenylalanine (186) via a plant-like p-oxidation mechanism (Fig. 32) [208-210]. This pathway is initiated by the unique phenylalanine ammonia-lyase EncP [211], which catalyzes the generation of cinnamic acid (187) from 186. The cinnamate-CoA ligase EncH... 

Many amino acids can lose ammonia to give an unsaturated acid. The enzymes that catalyse these reactions are known as amino acid ammonia lyases. The one that concerns us at the end of the shikimic acid pathway is phenylalanine ammonia lyase, which catalyses the elimination of ammonia from phenylalanine to give the common metabolite cinnamic acid. 

Phenylpropanoids have an aromatic ring with a three-carbon substituent. Caffeic acid (308) and eugenol (309) are known examples of this class of compounds. Phenylpropanoids are formed via the shikimic acid biosynthetic pathway via phenylalanine or tyrosine with cinnamic acid as an important intermediate. Phenylpropanoids are a diverse group of secondary plant compounds and include the flavonoids (plant-derived dyes), lignin, coumarins, and many small phenolic molecules. They are known to act as feeding deterrents, contributing bitter or astringent properties to plants such as lemons and tea. 

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