Proteomics mass spectrometry

Bernardo, K. Pakulat, N. Macht, M. Krut, O. Seifert, H. Fleer, S. Hunger, F. Kronke, M. Identification and discrimination of Staphylococcus aureus strains using matrix-assisted laser desorption/ionization-time of flight mass spectrometry. Proteomics 2002, 2, 747-753. 

Warscheid, B. Fenselau, C. A targeted proteomics approach to the rapid identification of bacterial cell mixtures by MALDI mass spectrometry. Proteomics 2004, 4, 2877-2892. 

Qian, W.J., Jacobs, J.M., Camp, D.G., 2nd, Monroe, M.E., Moore, R.J., Gritsenko, M.A., Calvano, S.E., Lowry, S.F.,Xiao, W.,Moldawer, L.L., Davis, R.W., Tompkins, R.G., Smith, R.D. (2005a). Comparative proteome analyses of human plasma following in vivo lipo-polysaccharide administration using multidimensional separations coupled with tandem mass spectrometry. Proteomics 5, 572-584. 

Vitali, B., Wasinger, V., Brigidi, P., Guilhaus, M. (2005). A proteomic view of Bifidobacterium infantis generated by multi-dimensional chromatography coupled with tandem mass spectrometry. Proteomics 5, 1859-1867. 

Groseclose MR, Massion PP, Chaurand P, et al. High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry. Proteomics 2008 8 3715-3724. 

Vasilescu J, Guo X, Kast J. Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry. Proteomics 2004 4 3845-3854. 

Lee, S., Young, N.L., Whetstone, P.A., Cheal, S.M., Benner, W.H., Lebrilla, C.B., and Meares, C.F. (2006) A method to site-specifically identify and quantitate carbonyl end products of protein oxidation using oxidation-dependent element coded affinity tags (O-ECAT) and nanoLiquid chromatography Fourier transform mass spectrometry./. Proteome Res. 5(3), 539-547. 

B. Warscheid and C. Fenslau. A Targeted Proteomics Approach to the Rapid Identification of Bacterial Cell Mixtures by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry. Proteomics, 4(2004) 2877-2892. 

M. Ramstrom, I. Ivonin, A. Johansson, H. Askmark, K. E. Markides, R. Zubarev, P. Hakansson, S.-M. Aquilonius, and J. Bergquist. Cerebrospinal Fluid Protein Patterns in Neurodegenerative Disease Revealed by Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Proteomics, 4(2004) 4010-4018. 

V. Applications of Protein Characterization with Mass Spectrometry Proteomics... 

Harvey D.J. (2001), Identification of protein-bound carbohydrates by mass spectrometry, Proteomics 1, 311-328. 

Suzuki, T., Ito, M., Ezine, T., Shikata, M., Ando, E., Utsumi, T., Tsimasawa, S., and Nishimura, O. (2007) Protein prenylation in an insect cell-free protein synthesis system and identification of products by mass spectrometry. Proteomics , 1942-1950. 

Harada T, Kuramitsu Y, Makino A et al. Expression of tropomyosin alpha-4 chain is increased in esophageal squamous eell eareinoma as evideneed by proteomie profiling by two-dimensional electrophoresis and liquid ehromatography-mass speetrometry/mass spectrometry. Proteomics Clinical Applications 2007 1 215-223. 

Cohen, A.M., Rumpel, K., Coombs, C.H. and Wastling, J.M. (2002) Characterisation of global protein expression by two-dimensional electrophoresis and mass spectrometry proteomics of Toxoplasma gondii. International Journal for Parasitology 32, 39-51. 

Liang CR, Leow CK, Neo JC, Tan GS, Lo SL, Lim JW, et al. Proteome analysis of human hepatocellular carcinoma tissues by two-dimensional difference gel electrophoresis and mass spectrometry. Proteomics 2005 5(8) 2258-2271. 

Meehan KL, Sadar MD. Quantitative profiling of LNCaP prostate cancer cells using isotope-coded affinity tags and mass spectrometry. Proteomics 2004 4(4) 1116-1134. 

Mamone, G., Addeo, F., Chianese, L., Di Luccia, A., De Martino, A., Nappo, A., Formisano, A., De Vivo, P., and Ferranti, P. (2005), Characterization of wheat gliadin proteins by combined two-dimensional gel electrophoresis and tandem mass spectrometry, Proteomics, 5(11), 2859-2865. 

Li, N., Shaw, A.R., Zhang, N.,Mak,A. andLi, L.(2004)Lipidraftproteomics analysis of in-solution digest of sodium dodecyl sulfate-solubilized lipid raft proteins by liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry. Proteomics 4, 3156-3166. 

Schrimpf, S., Meskenaite, V., Bmnner, E., Rutishauser, D., Walther, R, Eng, J., Aebersold, R. and Sonderegger, P. (2005) Proteomic analysis of synaptosomes using isotope-coded affinity tags and mass spectrometry. Proteomics 5, 2531-2541. 

Low, TY, Seow, TK. and Chung, M.C. (2002) Separation of human erythrocyte membrane associated proteins with one-dimensional and two-dimensional gel electrophoresis followed by identification with matrix-assisted laser desorption/ionization-time of flight mass spectrometry. Proteomics 2,... 

Fung, K.Y.C., Askovic, S., Basile, F. and Duncan, M.W. (2004) A simple and inexpensive approach to interfacing high-performance liquid chromatography and matrix-assisted laser desorption/ionization-time of flight-mass spectrometry. Proteomics 4, 3121-3127. 

Key Words Mass spectrometry proteome SDS-PAGE trypsin digest cell lysis. 1. Introduction... 

Jef ies N (2005) Algorithms for alignment of mass spectrometry proteomic data. Bioinfoimatics 21 (4) 3066-3073. 

Foret, R Preisler, J. Liquid Phase Interfacing and Miniaturization in Matrix-assisted Laser Desorption/Ionization Mass Spectrometry, Proteomics 2, 360-372 (2002). 

Huq M D, Khan S A, Park S W, et al. (2005). Mapping of phosphorylation sites of nuclear corepressor receptor interacting protein 140 by liquid chromatography-tandem mass spectrometry. Proteomics. 5 2157-2166. 

ID-LC-MS Shotgun Tandem Mass Spectrometry Proteomic Analysis 1494... 

Zhang Z, Smith D L, Smith J B (2001). Multiple separations facilitate identification of protein variants by mass spectrometry. Proteom. 1 1001-1009. 

Vakhrushev SY, Mormann M, Peter-Katalinic J. Identification of glycoconju-gates in the urine of a patient with congenital disorder of glycosylation by high-resolution mass spectrometry. Proteomics 2006 6 983-992. 

Damoc, E., Youhnovski, N., Crettaz, D., Tissot, J.D., and Przybylski, M,.(2003, High resolution proteome analysis of cryoglobulins using Fourier transform-ion cyclotron resonance mass spectrometry. Proteomics, in press. 

Wirth, U., Muller, D., Schindler, P., Lange, J., Van Oostrum, J., 2002, Post- translational modification detection using metastable ions in reflector matrix-assisted laser desorption / ionization-time of flight mass spectrometry. Proteomics 2 1445-1451. 

M. 2002, Identification and discrimination of Staphylococcus aureus strains using matrix-assisted laser desorption/ionization-time of flight mass spectrometry. Proteomics 2 747-753. 

Mattow, 1., Jungblut, P.R., Muller, E.C., and Kaufmann, S.H. 2001, Identification of acidic, low molecular mass proteins of Mycobacterium tuberculosis strain H37Rv by matrix-assisted laser desorption/ionization and electrospray ionization mass spectrometry. Proteomics 1 494-507. 

---