Proteomics comparative

Chen, M.-L. Chen, C.-H. (2005a). Comparative proteome analysis revealed up-regulation of transthyretin in rat brain under chronic clozapine treatment. /. Psychiatric Res., 41(1/2), 63-8. 

Chakraborty, A. Regnier, F. E. Global internal standard technology for comparative proteomics. J. Chromatogr. A 2002, 949,173-184. 

Regnier, F. E. Riggs, L. Zhang, R. Xiong, L. Liu, P. Chakraborty A. Seeley E. Sioma, C. Thompson, R. A. Comparative proteomics based on stable isotope labeling and affinity selection. J. Mass. Spectrom. 2002,37,133-145. 

Qian, W.J., Jacobs, J.M., Camp, D.G., 2nd, Monroe, M.E., Moore, R.J., Gritsenko, M.A., Calvano, S.E., Lowry, S.F.,Xiao, W.,Moldawer, L.L., Davis, R.W., Tompkins, R.G., Smith, R.D. (2005a). Comparative proteome analyses of human plasma following in vivo lipo-polysaccharide administration using multidimensional separations coupled with tandem mass spectrometry. Proteomics 5, 572-584. 

Edgar PF et al. Comparative proteome analysis of the hippocampus implicates chromosome 6q in schizophrenia. Mol. Psychiatry 2000 5 85-90. 

Edgar PF et al. A comparative proteome analysis of hippocampal tissue from schizophrenic and Alzheimer s disease individuals. Mol Psychiatry 1999 4 173-178. 

Edgar PF Comparative proteome analysis. Tissue homogenate from normal human hippocampus subjected to two-dimensional gel electrophoresis and Coo-massie blue protein staining. Mol Psychiatry 2000 5 85-90. 

The approach recruited to chemical proteomics in Reference [17] is called SILAC (stable isotope labeling with amino acids in cell culture) and is important in comparative proteomics (Figure 1). SILAC works well with cultured mammalian cells, but prokaryotes defeat it by metabolizing the label (usually supplied in lysine and arginine) into other amino acids. For applications beyond cultured eukaryotic cells, the reductive methylation route to differential labeling [18] is among the alternatives [15]-... 

Figure 1 The SILAC method for comparative proteomics. A real experiment requires collection of thousands of mass spectra corresponding to different peptides. In the case portrayed, the drug has lowered the abundance of the affected protein in the treated cells compared to the control cells. Multiple peptide fragments of the affected protein would show this effect, supporting the conclusion that the protein was affected.

V. G. DelVecchio and C. V. Mujer. 2004. Comparative Proteomics of Brucella Species. In Brucella Molecular and Cellular Biology, eds. I. Lopez-Goni, and I. Moriyon, Chapter 6, pp. 103-115, Horizon Bioscience, Norfolk, UK. 

Although almost 30 years old, the most widely used technology in comparative proteomics is still 2D PAGE. This applies to the global analysis of proteins... 

Wilson KE, Marouga R, Prime JE, et al. (2005) Comparative proteomic analysis using samples obtained with laser microdissection and saturation dye labelling. Proteomics 5, 3851-8. 

Le Moguen K, Lineet H, Deslandes E et al. Comparative proteomic analysis of cisplatin-sensitive IGROVl ovarian carcinoma cell line and its resistant eounterpart IGROVI-RIO. Proteomics 2006 6 5183-5192. 

Boonmee, S., Imtawil, K., Wongkham, C. and Wongkham, S. (2003) Comparative proteomic analysis of juvenile and adult liver fluke, Opisthorchis viverrini. Acta Tropica 88, 233-238. 

PDLIM1. Work now in progress in our laboratory has identified PDLIM1 as a direct in vivo substrate of calpain-3. PPT.TM1 is one of the proteins that were found to be differentially expressed during comparative proteomic analyses of calpain-3... 

It is within the context of finding products that have an effect on human health that a study has been published regarding the gene expression of prostate cancer cells treated with pomegranate fruit juice (70) where a comparative proteomics study provided insights for prostate cancer evolution. The involvement of pomegranate fruit products in the molecular mechanism of inducing prostate cancer cell apoptosis has been evidenced. Thus, a possible... 

The study of proteins is especially interesting in food safety because they may act as toxins, antinutrients, or allergens (53). Proteomics, a high-throughput technology able to quantify hundreds of proteins simultaneously, has become very important in comparative studies of GM plants and their nonmodified counterparts (54). Two conceptually different strategies can be followed in comparative proteomics the shotgun and the bottom-up approaches. 

Charles, R., Harris, J., Chase, M., Lebrun, L., Sheikh, A., LaRocque, R., Longvinenko, T., Rollins, S., Tarique, A., Hohmann, E., Rosenberg, I., Krastins, B., Sarracino, D., Qadri, F., Calderwood, B., Ryan, E. Comparative proteomic analysis of the PhoP regulon in Salmonella enterica serovar Typhi versus Typhimurium. PLoS One 4 (2009) e6994. 

Li C, Chen Z, Xiao Z, Wu X, Zhan X, Zhang X, et al. Comparative proteomics analysis of human lung squamous carcinoma. Biochem Biophys Res Commun 2003 309(1) 253-260. 

Borner GHH, Harbour M, Hester S, Lilley KS, Robinson MS. 2006. Comparative proteomics of clathrin-coated vesicles. J Cell Biol 175 571-578. 

Comparative proteome analysis of industrial strains in industrial settings Bioethanol production [354]... 

---