Ion coordinations

To illustrate the type of structures that will arise when metal ions interact with organic compounds, three examples which reveal the basic details of metal ion coordination complexes, are given below  

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From the equilibrium constant and the apparent rate constant, the rate constant for reaction of the metal-ion coordinated dienophile can be calculated using equation 2.2 (derived in... 

Reactions of the Hydroxyl Group. The hydroxyl proton of hydroxybenzaldehydes is acidic and reacts with alkahes to form salts. The lithium, sodium, potassium, and copper salts of sahcylaldehyde exist as chelates. The cobalt salt is the most simple oxygen-carrying synthetic chelate compound (33). The stabiUty constants of numerous sahcylaldehyde—metal ion coordination compounds have been measured (34). Both sahcylaldehyde and 4-hydroxybenzaldehyde are readily converted to the corresponding anisaldehyde by reaction with a methyl hahde, methyl sulfate (35—37), or methyl carbonate (38). The reaction shown produces -anisaldehyde [123-11-5] in 93.3% yield. Other ethers can also be made by the use of the appropriate reagent. 

A chain mechanism is proposed for this reaction. The first step is oxidation of a carboxylate ion coordinated to Pb(IV), with formation of alkyl radical, carbon dioxide, and Pb(III). The alkyl radical then abstracts halogen from a Pb(IV) complex, generating a Pb(IIl) species that decomposes to Pb(II) and an alkyl radical. This alkyl radical can continue the chain process. The step involving abstraction of halide from a complex with a change in metal-ion oxidation state is a ligand-transfer type reaction. 

Fully hydrated potassium ion coordinates about 10-11 molecules of water, whereas sodium coordinates about 16-17 molecules [115]. The ionic mobility of potassium is about 50% greater than that of sodium. In simple terms, this means that more of the water in a potassium-catalyzed resin will be available as free water for viscosity reduction and that movement of water from a glue line into the wood will have less effect in moving the adhesive off of the glue line with it. 

FIGURE 19.29 A mechanism for the pyruvate kinase reaction, based on NMR and EPR studies by Albert Mildvan and colleagues. Phosphoryl transfer from phosphoenolpyrnvate (PEP) to ADP occurs in four steps (a) a water on the Mg ion coordinated to ADP is replaced by the phosphoryl group of PEP (b) Mg dissociates from the -P of ADP (c) the phosphoryl group is transferred and (d) the enolate of pyruvate is protonated. (Adapted from Mildvan, A., 1979. Advances in Eiizymology 49 103-126.)... 

Creating regular arrangement of nucleobases through metal ion coordination and H-bond formation 98PAC977. 

The ratios of these slopes for L- and D-esters are shown in Table 12. The kL/kD values of the acylation step in the CTAB micelle are very close to those in Table 9, as they should be. It is interesting to note that the second deacylation step also occurs enantioselectively. Presumably it is due to the deacylation ocurring by the attack of a zinc ion-coordinated hydroxide ion which, in principle, should be enantioselective as in the hydroxyl group of the ligand. Alternatively, the enantioselectivity is also expected when the free hydroxide ion attack the coordinated carbonyl groups of the acyl-intermediate with the zinc ion. At any rate, the rates of both steps of acylation and deacylation for the L-esters are larger than those for the D-esters in the CTAB micelle. However, in the Triton X-100 micelle, the deacylation step for the D-esters become faster than for the L-esters. 

Transfer of the phosphoryl group to ADP in step 10 then generates ATP and gives enolpyruvate, which undergoes tautomerization to pyruvate. The reaction is catalyzed by pyruvate kinase and requires that a molecule of fructose 1,6-bis-phosphate also be present, as well as 2 equivalents of Mg2+. One Mg2+ ion coordinates to ADP, and the other increases the acidity of a water molecule necessary for protonation of the enolate ion. 

In chelation complexes (sometimes called inner complexes when uncharged) the central metal ion coordinates with a polyfunctional organic base to form a stable ring compound, e.g. copper(II) acetylacetonate or iron(III) cupferrate ... 

The polymerization filling was effected by the ion-coordination mechanism [17-19]. The monomers were ethylene, propylene, allene, os-butylene, butadiene. The fillers were mineral materials such as ash, graphite, silica gel, glass fibers. The ultimate aim of filler conditioning prior to polymerization is to secure, on its surface, metal complex or organometallic catalysts by either physical or chemical methods [17-19],... 

Zhou Y, Morais-Cabral JH, Kaufman A et al (2001) Chemistry of ion coordination and hydr ation revealed by a K+ channel-Fab complex at 2.0 A resolution. Nature 414 43-48... 

Electrochemical effects of metal ion coordination to non-innocent biologically important molecules. M. J. Clarke, Comments Inorg. Chem., 1984, 3,133-151 (57). 

A good example is the excited state of the tris(bipyridine)ruthenium(2+) ion, Ru(bpy)5+. This species results from the transfer of an electron from the metal to a ligand. In the language of localized valences, it is a ruthenium(3+) ion, coordinated to two bipyridines and to one bipyridyl radical anion in other words, [Ru3+(bpy)2(bpy )]2+. This excited state is a powerful electron donor and acceptor.17 The following equations show an example of each quenching mode ... 

Many other shapes are possible for complexes. The simplest are linear, with coordination number 2. An example is dimethylmercury(O), Hg(CI l,)2 (4), which is a toxic compound formed by bacterial action on aqueous solutions of I Ig ions. Coordination numbers as high as 12 are found for members of the / block, but they are rare in the d block. One interesting type of d-mctal compound in which there are 10 links between the ligands and the central metal ion is ferrocene, dicyciopentadi-enyliron(O), [Fe(C5H5)2] (5). Ferrocene is an aptly named sandwich compound, with the two planar cyclopentadienyl ligands the bread and the metal atom the filling. The formal name for a sandwich compound is a metallocene. 

The framework of the structure consists of silicon tetrahedra (four oxygen ions coordinated about a silicon ion at the comers of an approximately regular tetrahedron) and aluminium octahedra and (or) tetrahedra, with Si-0 = 1.59 A, Al-0 = 1.89 A in octahedra, 1.75 A in tetrahedra, as observed in other aluminosilicate crystals. 

The simplest iron-sulfur centers, which were first discovered in ru-bredoxins, consist of one iron ion coordinated by a distorted tetrahedron of cysteinyl sulfur atoms. This environment provides a weak ligand field giving a spin equal to and 2 when the ion is Fe(III) and Fe(II), respectively. It also determines the splitting of the ground spin manifold, and consequently the characteristics of the EPR spectrum. This splitting is generally described in the framework of the spin Hamiltonian ... 

Two-dimensional protein layer orientation could be also effected by metal-ion coordination Monolayer of iminodiacetate-Cu(II) lipid was successfully employed as substrate for oriented immobilization of proteins naturally displaying histidine residues on their surface [37]. Affmity-resin-displaying Ni(II) complexes could also be successfully employed for oriented protein immobilization [38]. 

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