Metal ions coordinated hydroxides

Fig. 1. Schematic representation for the three main CA inhibition mechanisms (A) Sulfonamides (and their isosteres, sulfamate, and sulfamide) substitute the fourth zinc ligand and bind in tetrahedral geometry of the metal ion (Alterio et al., 2009) (B) Inorganic anion inhibitors (thiocyanate as an example) add to the metal ion coordination sphere leading to trigonal bipyramidal adducts (Alterio et al., 2009) (C) Phenols anchor to the Zn(II) coordinated water molecule/hydroxide ion (Nair et al., 1994) (D) Coumarins (hydrolyzed in situ to 2-hydroxycinnamic acids) occlude the entrance of the active site cavity, interacting both with hydrophilic and hydrophobic amino acid residues. The inhibitor does not interact at all with the catalytically crucial Zn(II) ion which is coordinated by three His residues and a water molecule (Maresca et al, 2009 Maresca et al., 2010).

Perhaps the most extensively studied catalytic reaction in acpreous solutions is the metal-ion catalysed hydrolysis of carboxylate esters, phosphate esters , phosphate diesters, amides and nittiles". Inspired by hydrolytic metalloenzymes, a multitude of different metal-ion complexes have been prepared and analysed with respect to their hydrolytic activity. Unfortunately, the exact mechanism by which these complexes operate is not completely clarified. The most important role of the catalyst is coordination of a hydroxide ion that is acting as a nucleophile. The extent of activation of tire substrate througji coordination to the Lewis-acidic metal centre is still unclear and probably varies from one substrate to another. For monodentate substrates this interaction is not very efficient. Only a few quantitative studies have been published. Chan et al. reported an equilibrium constant for coordination of the amide carbonyl group of... 

Inspired by the many hydrolytically-active metallo enzymes encountered in nature, extensive studies have been performed on so-called metallo micelles. These investigations usually focus on mixed micelles of a common surfactant together with a special chelating surfactant that exhibits a high affinity for transition-metal ions. These aggregates can have remarkable catalytic effects on the hydrolysis of activated carboxylic acid esters, phosphate esters and amides. In these reactions the exact role of the metal ion is not clear and may vary from one system to another. However, there are strong indications that the major function of the metal ion is the coordination of hydroxide anion in the Stem region of the micelle where it is in the proximity of the micelle-bound substrate. The first report of catalysis of a hydrolysis reaction by me tall omi cell es stems from 1978. In the years that... 

A number of general features in Table 1-3 is apparent. Complexes may be cationic, neutral or anionic. Ligands may be simple monatomic ions, or larger molecules or ions. Many ligands are found as related neutral and anionic species (for example, water, hydroxide and oxide). Complexes may contain all of the same type of ligand, in which case they are termed homoleptic, or they may contain a variety of ligand types, whereby they are described as heteroleptic. Some ligands such as nitrite or thiocyanate can coordinate to a metal ion in more than one way. This is described as ambidentate behaviour. In such cases, we commonly indicate... 

It is very common for inorganic chemists to neglect or ignore the presence of solvent molecules coordinated to a metal centre. In some cases, this is just carelessness, or laziness, as in the description of an aqueous solution of cobalt(ii) nitrate as containing Co ions. Except in very concentrated solutions, the actual solution species is [Co(H20)6] . In other cases, it is not always certain exactly what ligands remain coordinated to the metal ion in solution, or how many solvent molecules become coordinated. Solutions of iron(iii) chloride in water contain a mixture of complex ions containing a variety of chloride, water, hydroxide and oxide ligands. 

There are three mechanistic possibilities for catalysis by two-metal ion sites (Fig. 10). The first of these is the classic two-metal ion catalysis in which one metal plays the dominant role in activating the substrate toward nucleophilic attack, while the other metal ion furnishes the bound hydroxide as the nucleophile (Fig. 10 a). Upon substrate binding, the previously bridged hydroxide shifts to coordinate predominately with one metal ion. Enzymes believed to function through such a mechanism include a purple acid phosphatase [79], DNA polymerase I [80], inositol monophosphatase [81],fructose-1,6-bisphosphatase [82], Bam HI [83], and ribozymes [63]. 

Fig. 10. Participation of a bi-nuclear metal site in enzymatic catalysis (a) the substrate coordinates to one metal ion while the other activates the nucleophile (b) the substrate is stabilized by amino acid side chains, and the metal ions provide the bridging hydroxide as the nucleophile (c) the bridging hydroxide is displaced by the substrate, and the nucleophile is another water, which may be activated by an amino acid side chain in the active site...

The hammerhead ribozyme and leadzyme belong to the second class of ribozymes. The short extra sequences of the ribozymes form the so-called catalytic loop which acts as the enzyme. There are two likely functions for metal ions in the mechanism of action of hammerhead ribozymes formation of metal hydroxide groups or direct coordination to phosphoryl oxygens. 

The adsorption of transition metal complexes by minerals is often followed by reactions which change the coordination environment around the metal ion. Thus in the adsorption of hexaamminechromium(III) and tris(ethylenediamine) chromium(III) by chlorite, illite and kaolinite, XPS showed that hydrolysis reactions occurred, leading to the formation of aqua complexes (67). In a similar manner, dehydration of hexaaraminecobalt(III) and chloropentaamminecobalt(III) adsorbed on montmorillonite led to the formation of cobalt(II) hydroxide and ammonium ions (68), the reaction being conveniently followed by the IR absorbance of the ammonium ions. Demetallation of complexes can also occur, as in the case of dehydration of tin tetra(4-pyridyl) porphyrin adsorbed on Na hectorite (69). The reaction, which was observed using UV-visible and luminescence spectroscopy, was reversible indicating that the Sn(IV) cation and porphyrin anion remained close to one another after destruction of the complex. 

Coordinative Environment. The coordinative environment of transition metal ions affects the thermodynamic driving force and reaction rate of ligand substitution and electron transfer reactions. FeIIIoH2+(aq) and hematite (a-Fe203) surface structures are shown in Figure 3 for the sake of comparison. Within the lattice of oxide/hydroxide minerals, the inner coordination spheres of metal centers are fully occupied by a regular array of O3- and/or 0H donor groups. At the mineral surface, however, one or more coordinative positions of each metal center are vacant (15). When oxide surfaces are introduced into aqueous solution, H2O and 0H molecules... 

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