Hydrophobic/hydrophilic amino

Functional properties of some enzymatically modified and EPM-treated products of milk proteins [136] were determined as follows. An enzymatically prehydrolyzed commercial milk protein concentrate (SR) without further hydrolysis, and casein hydrolyzed by alcalase, a-chymotrypsin, and papain, respectively, were used as substrates in the EPM reaction. The concentration of the hydrolysates was 20% w/ v in the EPM reactions. A methionine methyl ester hydrochloride/ substrate ratio of 1 5 was used for incorporating this amino acid. After incubation, the products with methionine incorporation were simultaneously dialyzed for 2 days through a cellophane membrane against distilled water. The nondialyzable fractions and the EPM products without amino acid enrichment were freeze-dried. Covalent methionine incorporation in the EPM products with amino acid enrichment was verified by exopeptidase hydrolysis of the protein chains. The functional properties of the different EPM products are summarized in Table 1. An important functional property of proteins and/or peptide mixtures is their emulsifying behavior. This is highly influenced by the molecular structure, the position and ratio of hydrophobic-hydrophilic amino acids. Emulsion activity was found to be low (34.0) for casein, and the values determined for enzyme hydrolyzed and modified products were in general even lower. The papain hydrolysate, sample H3, showed here a different behavior as well this was the one of the sample series that had the highest EAI value (43.0). The emulsion stability of the enzymatically modified products displayed tendencies quite opposite to the values of emul-... 

The solubilization of amino acids in AOT-reversed micelles has been widely investigated showing the importance of the hydrophobic effect as a driving force in interfacial solubihzation [153-157]. Hydrophilic amino acids are solubilized in the aqueous micellar core through electrostatic interactions. The amino acids with strongly hydrophobic groups are incorporated mainly in the interfacial layer. The partition coefficient for tryptophan and micellar shape are affected by the loading ratio of tryptophan to AOT [158],... 

Among the common amino acids, eleven have side chains that contain polar functional groups that can form hydrogen bonds, such as —OH, —NH2, and — CO2 H. These hydrophilic amino acids are commonly found on the outside of a protein, where their interactions with water molecules increase the solubility of the protein. The other nine amino acids have nonpolar hydrophobic side chains containing mostly carbon and hydrogen atoms. These amino acids are often tucked into the inside of a protein, away from the aqueous environment of the cell. 

Amphipathic peptides contain amino acid sequences that allow them to adopt membrane active conformations [219]. Usually amphipathic peptides contain a sequence with both hydrophobic amino acids (e.g., isoleucine, valine) and hydrophilic amino acids (e.g., glutamic acid, aspartic acid). These sequences allow the peptide to interact with lipid bilayer. Depending on the peptide sequence these peptides may form a-helix or j6-sheet conformation [219]. They may also interact with different parts of the bilayer. Importantly, these interactions result in a leaky lipid bilayer and, therefore, these features are quite interesting for drug delivery application. Obviously, many of these peptides are toxic due to their strong membrane interactions. 

The enrichments and depletions displayed in Figure 1 are concordant with what would be expected if disorder were encoded by the sequence (Williams et al., 2001). Disordered regions are depleted in the hydrophobic amino acids, which tend to be buried, and enriched in the hydrophilic amino acids, which tend to be exposed. Such sequences would be expected to lack the ability to form the hydrophobic cores that stabilize ordered protein structure. Thus, these data strongly support the conjecture that intrinsic disorder is encoded by local amino acid sequence information, and not by a more complex code involving, for example, lack of suitable tertiary interactions. 

Host defense peptide hydrophobicity (H) is defined as the proportion of hydrophobic amino acids within a peptide. Typically, these peptides are comprised of >30% hydrophobic residues and this governs the ability of a host defense peptide to partition into the lipid bilayer, an essential requirement for antimicrobial peptide-membrane interactions. Typically, the hydrophobic and hydrophilic amino acids of natural peptides are segregated to create specific regions or domains that allow for optimal interaction with microbial membranes. This likely represents evolutionary optimization to maximize the selectivity of these defense molecules. It has been established that increasing antimicrobial peptide hydrophobicity above a specific threshold correlates... 

We encountered the properties of hydrophilic and hydrophobic molecules in our thoughts about driving forces for formation of three-dimensional protein structures. Specifically, proteins fold in a way that puts most of the hydrophobic amino acid side chains into the molecular interior, where they can enjoy each other s company and avoid the dreaded aqueous environment. At the same time, they fold to get the hydrophilic amino acid side chains onto the molecular surface, where they happily interact with that enviromnent. The same ideas are important for the double-stranded helical structure of DNA. The hydrophobic bases are localized within the double hehx, where they interact with each other, and the strongly hydrophilic sugar and phosphate groups are exposed on the exterior of the double helix to the water environment. Now, we need to understand something more about structural features that control these properties. 

Enzymes, composed of various amino acids, constitute hydrophobic interior and hydrophilic exterior by arranging in space the appropriate amino acid residues. The hydrophobic receptor site is usually located inside and the hydrophilic amino acid residues located on the surface of enzyme are heavily solvated by water molecules in aqueous solution. Then, the supramolecular interactions with specific coenzymes, substrates, and inhibitors inevitably accompany extensive dehydration and conformational change of both enzyme and ligand. 

The transmembrane domain may be made up of one or many transmembrane elements. Generally, the transmembrane elements include 20-25 mostly hydrophobic amino acids. At the interface with aqueous medium, we often find hydrophilic amino acids in contact with the polar head groups of the phospholipids. In addition, they mediate distinct fixing of the transmembrane section in the phospholipid double layer. A sequence of 20-25 hydrophobic amino acids is seen as characteristic for membrane-spaiming elements. This property is used in analysis of protein sequences, to predict possible transmembrane elements in so-called hydropathy plots". 

In summary, the structural characteristics of peptides with high antioxidant activity are as follows a hydrogen bonding and hydrophilic amino acid residue in the position next to the C-terminus, a hydrophobic amino acid residue at the N-terminus, and an electronic amino acid residue at the C-terminus. 

Apolipoproteins ( apo designates the protein in its lipid-free form) combine with lipids to form several classes of lipoprotein particles, spherical complexes with hydrophobic lipids in the core and hydrophilic amino acid side chains at the surface (Fig. 21-39a). Different combinations of lipids and proteins produce particles of different densities, ranging from chylomicrons to high-density lipoproteins. These particles can be separated by ultracentrifugation (Table 21-2) and visualized by electron microscopy (Fig. 21-39b). 

A graphic representation of a three-dimensional model of the protein, cytochrome c. Amino acids with nonpolar, hydrophobic side chains (color) are found in the interior of the molecule, where they interact with one another. Polar, hydrophilic amino acid side chains (gray) are on the exterior of the molecule, where they interact with the polar aqueous solvent. (Illustration copyright by Irving Geis. Reprinted by permission.)... 

In soluble globular proteins, hydrophilic amino acids tend to be on the exterior of the molecule whereas hydrophobic amino acids are packed in the interior [13]. To quantitatively describe the location of an amino acid in relation to the protein surface, different measures of solvent exposure have been developed. In the present context, the solvent exposure is modeled by the number s of protein atoms that are within a sphere of radius R centered at the position of atom c of amino acid a [5]. If the amino acid is buried in the protein interior, s is large because the surrounding volume is (almost) completely filled by protein atoms. On the other hand, if the amino acid is exposed, part of the volume is occupied by solvent molecules, which results in a smaller s (see Table 11.1 and Figure 11.3). Again, relative frequencies fac(s) and fc(s) are derived from the database and the net potential for solvent exposure is then... 

Protein chains generally contain hydrophobic, hydrophilic and/or charged amino acid residues, which can be regarded as amphiphilic copolymers in a broad definition. The coordinate and cooperative interactions, such as... 

The main feature of the amino acid diagram is that A/a(js shows satisfactory linear correlation with A/part, with a slope of 1.22. Interfacial activity becomes stronger as the hydrophobicity of the amino acid residues increases. Since the amino acids have very hydrophilic amino and carboxyl groups, it may be said that the hydrophobicity increase enhances the amphiphilic character of the amino acids. 

The nature of the side chains of amino acids determines the hydrophobic (water hating) and hydrophilic (water loving) nature of the amino acid. Amino acids with hydrophobic side chains will be less soluble in water than those with hydrophilic side chains. The hydrophobic/hydrophilic nature of the side chains of amino acids has a considerable influence on the conformation adopted by a peptide or protein in aqueous solution. Furthermore, the hydrophobic/hydrophilic balance of the groups in a molecule will have a considerable effect on the ease of its passage through membranes (Appendix 5). 

Methods based on physicochemical properties of amino acid residues (Lim, 1974) such as volume, exposure, hydrophobicity/hydrophilicity, charge, hydrogen bonding potential, and so on. 

---