Intrinsic fluorescence

INTRINSIC AND EXTRINSIC FLUORESCENCE. Intrinsic fluorescence refers to the fluorescence of the macromolecule itself, and in the case of proteins this typically involves emission from tyrosinyl and tryptopha-nyl residues, with the latter dominating if excitation is carried out at 280 nm. The distance for tyrosine-to-tryp-tophan resonance energy transfer is approximately 14 A, suggesting that this mode of tyrosine fluorescence quenching should occur efficiently in most proteins. Moreover, tyrosine fluorescence is quenched whenever nearby bases (such as carboxylate anions) accept the phenolic proton of tyrosine during the excited state lifetime. To examine tryptophan fluorescence only, one typically excites at 295 nm, where tyrosine weakly absorbs. [Note While the phenolate ion of tyrosine absorbs around 293 nm, its high pXa of 10-11 in proteins typically renders its concentration too low to be of practical concern.] The tryptophan emission is maximal at 340-350 nm, depending on the local environment around this intrinsic fluorophore. 

TTF-based D-A systems have been extensively used in recent years to play around photoinduced electron transfer processes. Typically, when an electron acceptor moiety that emits fluorescence intrinsically is linked to TTF (D), the fluorescence due to the A moiety may be quenched because of a photoinduced electron transfer process (Scheme 15.1). Accordingly, these molecular systems are potentially interesting for photovoltaic studies. For instance, efficient photoinduced electron transfer and charge separation were reported for TTF-fullerene dyads.6,7 An important added value provided by TTF relies on the redox behavior of this unit that can be reversibly oxidized according to two successive redox steps. Therefore, such TTF-A assemblies allow an efficient entry to redox fluorescence switches, for which the fluorescent state of the fluorophore A can be reversibly switched on upon oxidation of the TTF unit. 

Here t. is the intrinsic lifetime of tire excitation residing on molecule (i.e. tire fluorescence lifetime one would observe for tire isolated molecule), is tire pairwise energy transfer rate and F. is tire rate of excitation of tire molecule by the external source (tire photon flux multiplied by tire absorjDtion cross section). The master equation system (C3.4.4) allows one to calculate tire complete dynamics of energy migration between all molecules in an ensemble, but tire computation can become quite complicated if tire number of molecules is large. Moreover, it is commonly tire case that tire ensemble contains molecules of two, tliree or more spectral types, and experimentally it is practically impossible to distinguish tire contributions of individual molecules from each spectral pool. 

Fluorescence Interference. The historical drawback to widespread use of Raman spectroscopy has been the strong fluorescence background exhibited by many materials, even those which are nominally nonfluorescent. This fluorescence often arises from an impurity in the sample, but may be intrinsic to the material being studied. Several methods have proved useflil in reducing this background. One of the simplest is sample purification. 

Fluorescence Microscope. A useful light microscope utilizes UV light to induce fluorescence in microscopic samples (40). Because fluorescence is often the result of trace components in a given sample rather than intrinsic fluorescence of the principal component, it is useful in the crime laboratory for the comparison of particles and fibers from suspect and crime scene. Particles of the same substance from different sources almost certainly show a different group of trace elements. It is also very useful in biology where fluorescent compounds can be absorbed on (and therefore locate and identify) components of a tissue section. 

Substances that are intrinsically fluorescent can often be exeited with long-wavelength UV light. They absorb the radiation and then emit, usually in the visible region of the spectrum, so that they appear as bright luminous zones, whieh can frequently be differentiated by color. They, thus, set themselves apart from the multitude of substances that only exhibit absorption. This detection possibility is characterized by high specificity (Sec. 2.3). 

After the dipped or sprayed chromatogram has been dried in a stream of cold air long-wave UV light (2 = 365 nm) reveals fluorescent yellow zones (flavonoids). Sterigmatocystine, which can be detected without derivatization on account of its red intrinsic fluorescence (detection limit 0.5 pg), also fluoresces pale yellow after being heated to 80°C [9] or 100°C [13] for 10 min on the other hand, citrinine, zearalenone and vomitoxin fluoresce blue. 

Note Since neither the DBA reagent nor 2-(2-hydroxyphenyl)benzotriazole are intrinsically fluorescent the chromatogram is not affected by interfering signals. 

In situ quantitation The reagent had no advantages for the direct determination of the acids investigated the determination of the intrinsic absorption or intrinsic fluorescences was to be preferred. 

In retrospect, by inspecting the literature, we find a confirmation of this variance (see for instance Ref. [67]). Peak intensities of bands originally assigned to Franck-Condon components of the excilonic emission have random relative intensities. This would not be possible if the bands were intrinsically vibronic. Since we know that the excilonic emission, as it is observed in single crystals, is rather sharp at low temperatures, we were forced to reconsider the assignment of the fluorescence of thin films. From the temperature dependence of the fluorescence effi-... 

Ebrahimzadeh, M. H., and Haddadchie, G. R. (1993). Intrinsic fluorescent compounds in Armillaria mellea hyphae and rhizomorph./. Set. Islamic Repub. Iran 4 241-246. 

Luminescence measurements on proteins occupy a large part of the biochemical literature. In what surely was one of the earliest scientific reports of protein photoluminescence uncomplicated by concurrent insect or microorganism luminescence, Beccari (64), in 1746, detected a visible blue phosphorescence from chilled hands when they were brought into a dark room after exposure to sunlight. Stokes (10) remarked that the dark (ultraviolet) portion of the solar spectrum was most efficient in generating fluorescent emission and identified fluorescence from animal matter in 1852. In general, intrinsic protein fluorescence predominantly occurs between 300 nm and 400 nm and is very difficult to detect visually. The first... 

Several different factors contribute to the depolarization of emitted fluorescence relative to the polarization of the excitation light. Most of these can be controlled by experimental parameters, but two factors are intrinsic to the method and must be evaluated ... 

Dansyl chloride that exhibits a blue intrinsic fluorescence, reacts with many amines and phenols to yield derivatives with fluorescence of another color. 

The Production Department was not amused, because lower values had been expected. Quality Control was blamed for using an insensitive, unse-lective, and imprecise test, and thereby unnecessarily frightening top management. This outcome had been anticipated, and a better method, namely polarography, was already being set up. The same samples were run, this time in duplicate, with much the same results. A relative confidence interval of 25% was assumed. Because of increased specificity, there were now less doubts as to the amounts of this particular heavy metal that were actually present. To rule out artifacts, the four samples were sent to outside laboratories to do repeat tests with different methods X-ray fluorescence (XRFi °) and inductively coupled plasma spectrometry (ICP). The confidence limits were determined to be 10% resp. 3%. Figure 4.23 summarizes the results. Because each method has its own specificity pattern, and is subject to intrinsic artifacts, a direct statistical comparison cannot be performed without first correcting the apparent concentrations in order to obtain presumably true... 

To obtain an increased intrinsic capacity to transgress biological membranes, a number of different modifications have been introduced to PNA. These modifications include conjugation of PNA to Hpophilic moieties [51, 97, 98], conjugation of PNA to certain so-caUed ceU-penetrating peptides [49, 55, 56, 66, 99-102] and conjugation to different moieties, which are supposed to be internahzed by specific cellular receptors [48, 103-105]. The work on cellular dehvery of PNA is, like the related work on ex vivo and in vivo effects of PNA, very difficult to summarize conclusively. First of all, the pronounced diversity of the reporter systems employed makes it impossible to directly compare the studies. Secondly, the widespread use of fluorescence studies in spite of the many inherent pitfalls of this technique makes it sometimes difficult to judge even qualitatively whether a presented result actually indicates cellular uptake. We have recently published a comprehensive review on cellular dehvery of PNA [82], with a more detailed assessment of the PNA dehvery hterature. 

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