Displays representational

Rats injected with 192 IgG-saporin displayed representational memory deficits as indicated by a decrease in the percentage of correct choices as compared with animals... 

It is possible to choose between different display representation (1) for the simulated spectra. In pulse duration type experiments the ID spectrum display is the recommended option whilst, because of the serious signal overlap that would occur in a ID spectrum, the ID series or pseudo 2D display are the best option to show the influence of a delay on a coupling pattern. The next three Check its show the main applications of the parameter optimizer routine. 

The bar chart below is a representation of the network shown in Figure 12.4. In addition the chart has been used to display the resource loading. 

Before the data can be visualised, ie displayed in a two or three-dimensional representation, the ultrasonic responses from the interior of the test-piece must be reconstructed from the raw ultrasonic data. The reconstruction process projects ultrasonic indications into 3D space. As well as reconstructing the entire ultrasonic data set within an acquisition file, it is possible to define an arbitrary sub-volume of the test object over which reconstruction will take place. The image resolution may also be defined by the user. Clearly, larger volumes or greater resolution will increase the computation time for both the reconstruction and visualisation processes. 

The ROSDAL (Representation of Organic Structures Description Arranged Linearly) syntax was developed by S. Welford, J. Barnard, and M.F. Lynch in 1985 for the Beilstein Institute. This line notation was intended to transmit structural information between the user and the Beilstein DIALOG system (Beilstein-Ohlme) during database retrieval queries and structure displays. This exchange of structure information by the ROSDAL ASCII character string is very fast. 

The representation of molecular surfaces, including the display of molecular surface properties, can be regarded as the next level of this hierarchy, but will be addressed in Sections 2,10 and 2,11 in this volume. 

Depending on the application, models of molecular surfaces arc used to express molecular orbitals, clcaronic densities, van dor Waals radii, or other forms of display. An important definition of a molecular surface was laid down by Richards [182] with the solvent-accessible envelope. Normally the representation is a cloud of points, reticules (meshes or chicken-wire), or solid envelopes. The transparency of solid surfaces may also be indicated (Figure 2-116). 

As the graphical capabilities of the computer systems became more powerful simultaneously the number of visualized structures increased. With the introduction of raster graphics (1974) and colored raster graphics displays (1979), other forms of molecular representations were possible [197]. CPK models could be represented and colored bonds or molecular surfaces could be visualized. 

The most well-known and at the same time the earliest computer model for a molecular structure representation is a wire frame model (Figure 2-123a). This model is also known under other names such as line model or Drciding model [199]. It shows the individual bonds and the angles formed between these bonds. The bonds of a molecule are represented by colored vector lines and the color is derived from the atom type definition. This simple method does not display atoms, but atom positions can be derived from the end and branching points of the wire frame model. In addition, the bond orders between two atoms can be expressed by the number of lines. 

Molecular orbitals were one of the first molecular features that could be visualized with simple graphical hardware. The reason for this early representation is found in the complex theory of quantum chemistry. Basically, a structure is more attractive and easier to understand when orbitals are displayed, rather than numerical orbital coefficients. The molecular orbitals, calculated by semi-empirical or ab initio quantum mechanical methods, are represented by isosurfaces, corresponding to the electron density surfeces Figure 2-125a). 

The representation of molecular properties on molecular surfaces is only possible with values based on scalar fields. If vector fields, such as the electric fields of molecules, or potential directions of hydrogen bridge bonding, need to be visualized, other methods of representation must be applied. Generally, directed properties are displayed by spatially oriented cones or by field lines. 

In order to represent 3D molecular models it is necessary to supply structure files with 3D information (e.g., pdb, xyz, df, mol, etc.. If structures from a structure editor are used directly, the files do not normally include 3D data. Indusion of such data can be achieved only via 3D structure generators, force-field calculations, etc. 3D structures can then be represented in various display modes, e.g., wire frame, balls and sticks, space-filling (see Section 2.11). Proteins are visualized by various representations of helices, / -strains, or tertiary structures. An additional feature is the ability to color the atoms according to subunits, temperature, or chain types. During all such operations the molecule can be interactively moved, rotated, or zoomed by the user. 

SymApps converts 2D structures From the ChemWindow drawing program into 3D representations with the help of a modified MM2 force field (see Section 7.2). Besides basic visualization tools such as display styles, perspective views, and light source adjustments, the module additionally provides calculations of bond lengths, angles, etc, Moreover, point groups and character tables can be determined. Animations of spinning movements and symmetry operations can also he created and saved as movie files (. avi). 

Besides these main categories, a large number of hybrid visualization techniques also exist, which arc combinations of the methods described. Well-known hybrid approaches arc the 2D or 3D glyph displays. These techniques combine the multidimensional representation capabilities of icon-based methods with the easy and intuitive representations of scatter-plot displays, Therefore these techniques can also be frequently found within chemical data analysis applications. 

Data visualization is the process of displaying information in any sort of pictorial or graphic representation. A number of computer programs are available to apply a colorization scheme to data or to work with three-dimensional representations. In recent years, this functionality has been incorporated in many... 

Fig. 5. A representation of ranitidine displaying four layers of the Connolly solvent-accessible dot surface normally color-coded in this process to correspond with the energies of electrostatic potential (color not shown here). Thus, the highest charge density would be indicated by red dots representing points where the attraction to an atom is strongest, and conversely, purple points would signify regions of maximal positive charge.

GORE. The CORE Electronic Chemistry Library is a joint project of Cornell University, OCLC (On-line Computer Library Center), Bell Communications Research (Bellcore), and the American Chemical Society. The CORE database will contain the full text of American Chemical Society Journals from 1980, associated information from Chemical Abstracts Service, and selected reference texts. It will provide machine-readable text that can be searched and displayed, graphical representations of equations and figures, and full-page document images. The project will examine the performance obtained by the use of a traditional printed index as compared with a hypertext system (SUPERBOOK) and a document retrieval system (Pixlook) (6,116). 

Molscript A program for displaying molecular 3D structures in both schematic and detailed representations, http //www.avatar.se/molscript/. 

All pictorial representations of molecules are simplified versions of our current model of real molecules, which are quantum mechanical, probabilistic collections of atoms as both particles and waves. These are difficult to illustrate. Therefore we use different types of simplified representations, including space-filling models ball-and-stick models, where atoms are spheres and bonds are sticks and models that illustrate surface properties. The most detailed representation is the ball-and-stick model. However, a model of a protein structure where all atoms are displayed is confusing because of the sheer amount of information present (Figure 2.9a). 

The human-machine interface (usually abbreviated to interface) is a major focus of interest for the HF/E approach to the reduction of human error. A representation of the interface in a CPI context is provided in Figure 2.2. The interface is the boimdary across which information from the process is transduced by sensors and then displayed in a form that can be utilized by the... 

Representational layout of control panels. Where the physical location of items is important, for example, area displays in fire control systems, the layout of the displays on a control panel should reflect the geographical layout of the plant. In other cases a functional arrangement of the elements of the process plant will be appropriate, for example, when monitoring the status of the system via an alarm panel. 

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