Coenzyme reactions catalyzed

Vitamin Coenzyme Reaction catalyzed Human deficiency... 

As another example, studies with deuterium-labeled substrates have shown that the reaction of ethanol with the coenzyme NAD+ catalyzed by yeast alcohol dehydrogenase occurs with exclusive removal of the pro-R hydrogen from ethanol and with addition only to the Re face of NAD+. 

Step 3 of Figure 29.3 Alcohol Oxidation The /3-hydroxyacyl CoA from step 2 is oxidized to a /3-ketoacyl CoA in a reaction catalyzed by one of a family of L-3-hydroxyacyl-CoA dehydrogenases, which differ in substrate specificity according to the chain length of the acyl group. As in the oxidation of sn-glycerol 3-phosphate to dihydroxyacetone phosphate mentioned at the end of Section 29.2, this alcohol oxidation requires NAD+ as a coenzyme and yields reduced NADH/H+ as by-product. Deprotonation of the hydroxyl group is carried out by a histidine residue at the active site. 

The replacement of the O—H O bridges with BF2 of BPh2 may affect both the complex geometry [178] and the electron density at the central metal ion [184], providing the opportunity of adjusting the Co—C bond strength towards homolytic cleavage, which is currently accepted to be the first step of the reactions catalyzed by the vitamin B12 coenzyme [185]. 

Coenzymes facilitate chemical reactions through a range of different reaction mechanisms, some of which will be discussed in detail in this review. However, in all cases structural features of the coenzyme allow particular reactions to proceed along a mechanistic pathway in which reaction intermediates are more thermodynamically and kinetically accessible. When incorporated into apoen-zyme active sites, the coenzyme reactivity is influenced by a well-defined array of amino acid functional groups. For a given coenzyme, the particular array of amino acids presented by the different apoenzymes can drastically alter the degree of rate acceleration and product turnover and can specify the nature of the reaction catalyzed. 

The flavin-based coenzymes flavin adenine dinucleotide (FAD) and flavin mononucleotide (FMN) are associated with a wide variety of enzymes that catalyze reactions in critical biosynthetic and catabolic processes (Fig. 16). Unlike other coenzymes, the reactions catalyzed do not conserve specific mechanistic pathways. In each case the apoenzyme serves to steer the course of the reaction through specific interactions with substrate and coenzyme [55]. Nonetheless, there are common features of the interactions of the apoenzymes with the flavin which can be exploited in the design of functional peptides and proteins. 

The intermediary metabolism has multienzyme complexes which, in a complex reaction, catalyze the oxidative decarboxylation of 2-oxoacids and the transfer to coenzyme A of the acyl residue produced. NAD" acts as the electron acceptor. In addition, thiamine diphosphate, lipoamide, and FAD are also involved in the reaction. The oxoacid dehydrogenases include a) the pyruvate dehydrogenase complex (PDH, pyruvate acetyl CoA), b) the 2-oxoglutarate dehydrogenase complex of the tricarboxylic acid cycle (ODH, 2-oxoglutarate succinyl CoA), and c) the branched chain dehydrogenase complex, which is involved in the catabolism of valine, leucine, and isoleucine (see p. 414). 

Enzyme/coenzyme Metal in the active site Reaction catalyzed... 

The mechanism for bacterial synthesis of PHA is not the simple dehydration reaction between alcohol and carboxyl groups. It is more complicated and involves the coenzyme A thioester derivative of the hydroxyalkanoic acid monomer (produced from the organic feedstock available to the bacteria) [Kamachi et al., 2001], Growth involves an acyl transfer reaction catalyzed by the enzyme PHA synthase (also called a polymerase) [Blei and Odian,... 

D. M. Smith, S. D. Wetmore, and L. Radom, Theoretical Studies of Coenzyme-Bi2-Dependent Carbon-Skeleton Rearrangements, in Theoretical Biochemistry—Processes and Properties of Biological Systems, L. A. Ericksson, Ed., Elsevier, Amsterdam, The Netherlands, 2001, pp. 183-214. Electronic structure calculations are applied to the understanding and prediction of how enzymes can lower the barriers to the 1,2-shifts in radicals that occur in reactions catalyzed by B12. 

In addition to the isomerization of glutamic acid, several other coenzyme B12-catalyzed reactions have now been discovered (I, 9, 15, 31, 51). The conversion of methylmalonic acid to succinic acid is very similar, and has been shown to occur through the migration of a carboxyl group, and postulated to involve free radical itermediates, as follows (15) ... 

S ATP -I- formate <1> (<1> the product formyl phosphate serves as formyl donor for the synthesis of formyl coenzyme A in a reaction catalyzed by phosphate acetyltransferase [1]) (Reversibility <1> [1]) [1]... 

To purify a protein, it is essential to have a way of detecting and quantifying that protein in the presence of many other proteins at each stage of the procedure. Often, purification must proceed in the absence of any information about the size and physical properties of the protein or about the fraction of the total protein mass it represents in the extract. For proteins that are enzymes, the amount in a given solution or tissue extract can be measured, or assayed, in terms of the catalytic effect the enzyme produces—that is, the increase in the rate at which its substrate is converted to reaction products when the enzyme is present. For this purpose one must know (1) the overall equation of the reaction catalyzed, (2) an analytical procedure for determining the disappearance of the substrate or the appearance of a reaction product, (3) whether the enzyme requires cofactors such as metal ions or coenzymes, (4) the dependence of the enzyme activity on substrate concentration, (5) the optimum pH, and (6) a temperature zone in which the enzyme is stable and has high activity. Enzymes are usually assayed at their optimum pH and at some convenient temperature within the range... 

In the first step, pyruvate is decarboxylated in an irreversible reaction catalyzed by pyruvate decarboxylase. This reaction is a simple decarboxylation and does not involve the net oxidation of pyruvate. Pyruvate decarboxylase requires Mg24" and has a tightly bound coenzyme, thiamine pyrophosphate, discussed below. In the second step, acetaldehyde is reduced to ethanol through the action of alcohol dehydrogenase, with... 

FIGURE 16-2 Overall reaction catalyzed by the pyruvate dehydrogenase complex. The five coenzymes participating in this reaction, and the three enzymes that make lip the enzyme complex, are discussed in the text. 

Oxidation of unsaturated fatty acids requires two additional enzymes enoyl-CoA isomerase and 2,4-dienoyl-CoA reductase. Odd-number fatty acids are oxidized by the /3-oxidation pathway to yield acetyl-CoA and a molecule of propionyl-CoA This is carboxylated to methylmalonyl-CoA, which is isomerized to succinyl-CoA in a reaction catalyzed by methylmalonyl-CoA mutase, an enzyme requiring coenzyme B12. 

In extraliepatic tissues, d-/3-hydroxybutyrate is oxidized to acetoacetate by o-/3-hydroxybutyrate dehydrogenase (Fig. 17-19). The acetoacetate is activated to its coenzyme A ester by transfer of CoA from suc-cinyl-CoA, an intermediate of the citric acid cycle (see Fig. 16-7), in a reaction catalyzed by P-ketoacyl-CoA transferase. The acetoacetyl-CoA is then cleaved by thiolase to yield two acetyl-CoAs, which enter the citric acid cycle. Thus the ketone bodies are used as fuels. 

Fatty acids are converted to their coenzyme A esters in a reversible reaction catalyzed by acyl-CoA synthetase ... 

The conversion of pyruvate to ethanol occurs by the two reactions summarized in Figure 8.24. The decarboxylation of pyruvate by pyruvate decarboxylase occurs in yeast and certain microorganisms, but not in humans. The enzyme requires thiamine pyrophosphate as a coenzyme, and catalyzes a reaction similar to that described for pyruvate dehydrogenase (see p. 108). 

Formation of S-aminolevulinic acid (ALA) All the carbon and nitrogen atoms of the porphyrin molecule are provided by two simple building blocks glycine (a nonessential amino acid) and succinyl CoA (an intermediate in the citric acid cycle). Glycine and succinyl CoA condense to form ALA in a reaction catalyzed by ALA synthase (Figure 21.3) This reaction requires pyridoxal phosphate as a coenzyme, and is the rate-controlling step in hepatic porphyrin biosynthesis. 

Reactions of the TCA cycle Enzyme that oxidatively decarboxylates pyruvate, its coenzymes, activators, and inhibitors REACTIONS OF THE TRICARBOXYLIC ACID CYCLE (p. 107) Pyruvate is oxidatively decarboxylated by pyruvate dehydrogenase complex producing acetyl CoA, which is the major fuel for the tricarboxylic acid cycle (TCA cycle). The irreversible set of reactions catalyzed by this enzyme complex requires five coenzymes thiamine pyrophosphate, lipoic acid, coenzyme A (which contains the vitamin pantothenic acid), FAD, and NAD. The reaction is activated by NAD, coenzyme A, and pyruvate, and inhibited by ATP, acetyl CoA, and NADH. 

Committed step in heme synthesis, its coenzyme, and inhibitor The committed step in heme synthesis is the formation of 5-amlnolevulinic acid (ALA). The reaction, which requires pyridoxal phosphate as a coenzyme, is catalyzed by ALA synthase. The reaction is inhibited by hemin (the oxidized form of heme that accumulates in the cell when it is being under-used). The conversion of protoporphyrin IX to heme, catalyzed by ferrochelatase, is inhibited by lead. 

Of the three aromatic amino acid hydroxylases, the reaction catalyzed by L-phenylalanine hydroxylase has been subjected to mechanistic scrutiny most often (B-71MI11003, B-74MH1005, B-76MI11006). Of a number of isomeric dihydrobiopterins that are possible, it is the p-quinonoid dihydrobiopterin (20) that is the coenzyme-derived product in the reaction catalyzed by this enzyme (Scheme 7) (B-71MIH003). (20) is reduced back to (19) by an... 

R and S isomers of HDT]acetic acid were synthesized by chemical and enzymatic methods that yield products of known stereochemistry.1819 The two isomers were then distinguished by using the following ingenious enzymatic assays. The acetic acid was first converted to acetyl-coenzyme A (by a reaction of the carboxyl group—and not the methyl—of acetic acid). The acetyl-coenzyme A was then condensed with glyoxylate to form malate in an essentially irreversible reaction catalyzed by malate synthase (equation 8.27). The crucial feature of this reaction is that it is subject to a normal kinetic isotope effect, so that more H than D... 

Co corrinoids play central roles in the two classes of enzymic reactions, i.e. methyl transfer mediated by vitamin B,2 and mutase or isomerase reactions catalyzed by coenzyme B. 253 Though there remain many ambiguities, the former is considered to be a combination of Scheme 100, i and its reverse process, and the latter to be represented by Scheme 103. 

The other classes of flavoproteins in table 10.2 interact with molecular oxygen either as the electron-acceptor substrates in redox reactions catalyzed by oxidases or as the substrate sources of oxygen atoms for oxygenases. Molecular oxygen also serves as an electron acceptor and source of oxygen for metalloflavoproteins and dioxygenases, which are not listed in the table. These enzymes catalyze more complex reactions, involving catalytic redox components, such as metal ions and metal-sulfur clusters in addition to flavin coenzymes. 

En/ymes catalyze a broad spectrum of reactions. They often require such coen/yincs as the nicotinamides NADPH and NADH or a nucleoside triphosphate like ATP together with cofactors, usually metal ions. Hydrolases, including PLE, are exceptions in this regard. They complete their tasks without the need for coenzymes. Enzyme-catalyzed asymmetric syntheses can be conducted either with cell-free enzymes or with microbial systems (i.e., enzymes included within cells).14... 

Table 1 Rearrangement Reactions Catalyzed by Coenzyme B12 (AdoCbl)-Dependent Enzymes...

Acetylation reactions catalyzed by acetyltransferase enzymes involve the attachment of the acetyl moiety, shown as the final step in glutathione conjugation and the production of a mercapturic acid conjugate in Figure 7.10. The cofactor upon which the acetyltransferase enzyme acts in acetylation is acetyl coenzyme A ... 

The reactions catalyzed by transaminases are anergonic as they do not require an input of metabolic energy. They are also freely reversible, the direction of the reaction being determined by the relative concentrations of the amino acid-keto acid pairs. Pyridoxal phosphate is not just used as the coenzyme in transamination reactions, but is also the coenzyme for several other reactions involving amino acids including decarboxylations, deaminations, racemizations and aldol cleavages. 

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