Amphipaths

Nonaqueous Dispersion Polymerization. Nonaqueous dispersion polymers are prepared by polymerizing a methacryhc monomer dissolved in an organic solvent to form an insoluble polymer in the presence of an amphipathic graft or block copolymer. This graft or block copolymer, commonly called a stabilizer, lends coUoidal stabiUty to the insoluble polymer. Particle sizes in the range of 0.1—1.0 pm were typical in earlier studies (70), however particles up to 15 pm have been reported (71). 

Surface activity is not limited to aqueous systems, however. AH of the combiaations of aqueous and nonaqueous phases are known to occur, but because water is present as the solvent phase in the overwhelming proportion of commercially important surfactant systems, its presence is assumed in much of the common terminology of industry. Thus, the water-soluble amphipathic groups are often referred to as solubilizing groups. 

Effects of Surfactants on Solutions. A surfactant changes the properties of a solvent ia which it is dissolved to a much greater extent than is expected from its concentration effects. This marked effect is the result of adsorption at the solution s iaterfaces, orientation of the adsorbed surfactant ions or molecules, micelle formation ia the bulk of the solution, and orientation of the surfactant ions or molecules ia the micelles, which are caused by the amphipathic stmcture of a surfactant molecule. The magnitude of these effects depends to a large extent on the solubiUty balance of the molecule. An efficient surfactant is usually relatively iasoluble as iadividual ions or molecules ia the bulk of a solution, eg, 10 to mol/L. 

Residues 50-64 of the GAL4 fragment fold into an amphipathic a helix and the dimer interface is formed by the packing of these helices into a coiled coil, like those found in fibrous proteins (Chapters 3 and 14) and also in the leucine zipper families of transcription factors to be described later. The fragment of GAL4 comprising only residues 1-65 does not dimerize in the absence of DNA, but the intact GAL4 molecule does, because in the complete molecule residues between 65 and iOO also contribute to dimer interactions. 

Such solubilized protein-detergent complexes are the starting material for purification and crystallization. For some proteins, the addition of small amphipathic molecules to the detergent-solubilized protein promotes crystallization, probably by facilitating proper packing interactions between the molecules in all three dimensions in a crystal (Figure 12.2b). Therefore, many different amphipathic molecules are added in separate crystallization experiments until, by trial and error, the correct one is found. 

FIGURE 6.24 (a) The alpha helix consisting of residues 153-166 (red) in flavodoxin from Anahaena is a surface helix and is amphipathic. (b) The two helices (yellow and blue) in the interior of the citrate synthase dimer (residues 260-270 in each monomer) are mostly hydrophobic, (c) The exposed helix (residues 74-87—red) of calmodulin is entirely accessible to solvent and consists mainly of polar and charged residues. 

The lipids found in biological systems are either hydrophobic (containing only nonpolar groups) or amphipathic, which means they possess both polar and nonpolar groups. The hydrophobic nature of lipid molecules allows membranes to act as effective barriers to more polar molecules. In this chapter, we discuss the chemical and physical properties of the various classes of lipid molecules. The following chapter considers membranes, whose properties depend intimately on their lipid constituents. 

Amphipathic lipids spontaneously form a variety of structures when added to aqueous solution. All these structures form in ways that minimize contact between the hydrophobic lipid chains and the aqueous milieu. For example, when small amounts of a fatty acid are added to an aqueous solution, a mono-layer is formed at the air-water interface, with the polar head groups in contact with the water surface and the hydrophobic tails in contact with the air (Figure 9.2). Few lipid molecules are found as monomers in solution. 

Further addition of fatty acid eventually results in the formation of micelles. Micelles formed from an amphipathic lipid in water position the hydrophobic tails in the center of the lipid aggregation with the polar head groups facing outward. Amphipathic molecules that form micelles are characterized by a unique critical micelle concentration, or CMC. Below the CMC, individual lipid molecules predominate. Nearly all the lipid added above the CMC, however, spontaneously forms micelles. Micelles are the preferred form of aggregation in water for detergents and soaps. Some typical CMC values are listed in Figure 9.3. 

FIGURE 10.31 The umbrella model of membrane chamiel protein insertion. Hydrophobic helices insert directly into the core of the membrane, with amphipathic helices arrayed on the surface like an open umbrella. A trigger signal (low pH or a voltage gradient) draws some of the amphipathic helices into and across the membrane, causing the pore to open. 

Interestingly, certain other pore-forming toxins possess helix-bundle motifs that may participate in channel formation, in a manner similar to that proposed for colicin la. For example, the S-endotoxui produced by Bacillus thuringiensis is toxic to Coleoptera insects (beetles) and is composed of three domains, including a seven-helix bundle, a three-sheet domain, and a /3-sandwich. In the seven-helix bundle, helix 5 is highly hydrophobic, and the other six helices are amphipathic. In solution (Figure 10.32), the six amphipathic... 

FIGURE 10.35 The amino acid sequences of several amphipathic peptide antibiotics, a-Helices formed from these peptides cluster polar residues on one face of the helix, with nonpolar residues at other positions. 

Death domain (DD) superfamily consists of structurally related homotypic interaction motifs of approximately 90 amino acids. The motifs are organized in six antiparallel amphipathic a-helices, the so-called DD fold. The four members of the super family are the death domain (DD), the death effector domain (DED), the caspase activation and recruitment domain (CARD), and the Pyrin domain. All are important mediators for the assembly of caspase activating complexes. 

The main transport form of lipids in the cir culation. They are spherical macromolecules of 10-1200 nm diameter-composed of a core of neutral lipids (mostly cholesterol ester and triglycerides) surrounded by an amphipathic shell of polar phospholipids and cholesterol. Embedded in the shell of lipoproteins are apolipoproteins that are essential for assembly of theparticles in tissues that secrete lipoproteins, and for their recognition by target cells. 

CTC, used extensively to monitor calcium release in both whole cells and isolated organelles (28-33), is an amphipathic molecule that easily passes through cell membranes (see Figure 1). The fluorescence of this probe is enhanced more than fiftyfold by binding of calcium when the dye is intercalated into biological membranes. 

In order for folded helices to assemble into tertiary structures in water, they need to be amphipathic (e.g. where one hehcal face is hydrophobic and the other is hydrophilic). Because the first hehcal peptoids contained very hydrophobic chiral residues, ways to increase the water solubihty and side-chain diversity of the hehx-indudng residues were investigated [49]. It was found that a series of side chains with chiral-substituted carboxamides in place of the aromatic group could stiU favor hehx formation, while dramatically increasing water solubility. 

The magaiitins are a class of hnear, cationic, faciaUy amphipathic and hehcal antibacterial peptides derived from frog skin [51]. The magaiitins exhibit highly selective and potent antimicrobial activity against a broad spectrum of organisms [52, 53]. As these peptides are faciaUy amphipathic, the magainins have a cationic heli-... 

As such, the magainins provide a useful initial target for peptoid-based peptido-mimetic efforts. Since the helical structure and sequence patterning of these peptides seem primarily responsible for their antibacterial activity and specificity, it is conceivable that an appropriately designed, non-peptide helix should be capable of these same activities. As previously described (Section 1.6.2), peptoids have been shown to form remarkably stable hehces, with physical characterishcs similar to those of peptide polyprohne type-I hehces (e.g. cis-amide bonds, three residues per helical turn, and 6A pitch). A faciaUy amphipathic peptoid helix design, based on the magainin structural motif, would therefore incorporate cationic residues, hydrophobic aromatic residues, and hydrophobic aliphathic residues with threefold sequence periodicity. 

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